BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0451.0002.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00185760.1| hypothetical protein Rxyl350001 [Rubrobacter ... 233 4e-60 ref|ZP_00017658.1| hypothetical protein [Chloroflexus aurantiacus] 233 4e-60 ref|ZP_00185758.1| hypothetical protein Rxyl349801 [Rubrobacter ... 232 8e-60 ref|NP_359564.1| Fucose kinase [Streptococcus pneumoniae R6] >gi... 230 3e-59 ref|NP_346581.1| L-fuculose kinase fucK, putative [Streptococcus... 228 1e-58 >ref|ZP_00185760.1| hypothetical protein Rxyl350001 [Rubrobacter xylanophilus DSM 9941] Length = 499 Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 176/304 (57%), Gaps = 6/304 (1%) Query: 1 MSKLKKLLAVDLGASSGRVILGTYDGSRIVTEELHRFANTPVEAGGHLYWNVPELLKEIK 60 MS + LAVDLGA SGRV LG +DG R+ EELHRF N PV L+W+V L E + Sbjct: 1 MSGEARFLAVDLGAESGRVFLGRFDGGRVSLEELHRFPNVPVRVADGLHWDVLRLFGETE 60 Query: 61 QGILLAVQAGNEIASLSVDTWGVDYGFVDHAGKLLNAPHHYRDQRVGKYRARXXXXXXXX 120 +G L AG + S+ VD WGVD+ +D G L++ P+HYRD R Sbjct: 61 RG--LGRAAGRGVRSVGVDAWGVDFALLDREGALVSNPYHYRDARTAGMMEEAGRRVPRE 118 Query: 121 XQFRLTGNQPDPINTVYQLFADLQENPLLQEQVDHILMMPDLFLYLLSGASSAERTILST 180 +R+TG Q P+NT+YQL A ++ +PLL E D +LM+PDLF Y L G E T +T Sbjct: 119 EIYRITGIQFIPLNTLYQLLA-MEGSPLL-EASDRLLMIPDLFAYWLCGERLCEHTAATT 176 Query: 181 SGLLDAVTGEPSSEVFGRLGIPTRLIPPRVEAGTAIGTLRPELCAKLGCGPIRVIAGASH 240 + L A G + + R+G+P RL V GT +G L P + G G V+A A+H Sbjct: 177 TQLY-AAGGGWARALIRRMGLPERLFGEVVRPGTRLGGLLPGVREDTGLGEAEVVAVATH 235 Query: 241 DTASAVASIPYADKDGAAFISCGTWSLVGMETKAPVITALSYEYGFTNEGCSGSGNRLLX 300 DTASAVA++P +D A+IS GTWSLVG+ET+ PVI+ Y FTNEG G NRLL Sbjct: 236 DTASAVAAVPARGRD-FAYISSGTWSLVGVETERPVISEEGLRYNFTNEGGFGGTNRLLK 294 Query: 301 XXXG 304 G Sbjct: 295 NVMG 298 >ref|ZP_00017658.1| hypothetical protein [Chloroflexus aurantiacus] Length = 478 Score = 233 bits (594), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 181/307 (58%), Gaps = 6/307 (1%) Query: 1 MSKLKKLLAVDLGASSGRVILGTYDGSRIVTEELHRFANTPVEAGGHLYWNVPELLKEIK 60 M++L +A+D+GASSGRVILG +DG+R EE+HRF N +E GHL+W+V L E++ Sbjct: 1 MTELAHFIAIDIGASSGRVILGRWDGTRFTLEEIHRFPNGMIERDGHLFWDVNRLWHEVQ 60 Query: 61 QGILLAV--QAGNEIASLSVDTWGVDYGFVDHAGKLLNAPHHYRDQRVGKYRARXXXXXX 118 G+ + + +AS+ +DTW VDYG +D AG L+ P YRD R R Sbjct: 61 HGLRTYARHEQSSRLASIGIDTWAVDYGLIDEAGNLIGDPFAYRDARNEGMAERVDAIIP 120 Query: 119 XXXQFRLTGNQPDPINTVYQLFADLQENPLLQEQVDHILMMPDLFLYLLSGASSAERTIL 178 + TG Q P NT+YQL+A+ Q + L + +L++PDLF Y L+G AE T Sbjct: 121 PTELYERTGLQRLPFNTLYQLYAERQGDRL--PRAATMLLIPDLFHYWLTGKRVAEYTNA 178 Query: 179 STSGLLDAVTGEPSSEVFGRLGIPTRLIPPRVEAGTAIGTLRPELCAKLGC-GPIRVIAG 237 ST+ LDA ++++ RLGIPT L+PP V GT +G L PEL LG G + V+A Sbjct: 179 STTMFLDARRRVWATDLLERLGIPTHLLPPLVMPGTPLGPLVPELREALGLPGNVTVVAV 238 Query: 238 ASHDTASAVASIPYADKDGAAFISCGTWSLVGMETKAPVITALSYEYGFTNEGCSGSGNR 297 +HDTASAVA++P+ D +A+IS GTWSLVG+E P+I + TNEG R Sbjct: 239 GTHDTASAVAAVPHLDAQ-SAYISSGTWSLVGVERSEPLINEAARRLNVTNEGGVYGTIR 297 Query: 298 LLXXXXG 304 LL G Sbjct: 298 LLKNVSG 304 >ref|ZP_00185758.1| hypothetical protein Rxyl349801 [Rubrobacter xylanophilus DSM 9941] Length = 615 Score = 232 bits (592), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 176/304 (57%), Gaps = 6/304 (1%) Query: 1 MSKLKKLLAVDLGASSGRVILGTYDGSRIVTEELHRFANTPVEAGGHLYWNVPELLKEIK 60 MS + LAVDLGA SGRV LG +DG R+ EELHRF N PV L+W+V L E + Sbjct: 117 MSGEARFLAVDLGAESGRVFLGRFDGGRVSLEELHRFPNVPVRVADGLHWDVLRLFGETE 176 Query: 61 QGILLAVQAGNEIASLSVDTWGVDYGFVDHAGKLLNAPHHYRDQRVGKYRARXXXXXXXX 120 +G L AG + S+ VD WGVD+ +D G L++ P+HYRD R Sbjct: 177 RG--LGRAAGRGVRSVGVDAWGVDFALLDREGALVSNPYHYRDARTAGMMEEAGRRVPRE 234 Query: 121 XQFRLTGNQPDPINTVYQLFADLQENPLLQEQVDHILMMPDLFLYLLSGASSAERTILST 180 +R+TG Q P+NT+YQL A ++ +PLL E D +LM+PDLF Y L G E T +T Sbjct: 235 EIYRITGIQFIPLNTLYQLLA-MEGSPLL-EASDRLLMIPDLFAYWLCGERLCEHTAATT 292 Query: 181 SGLLDAVTGEPSSEVFGRLGIPTRLIPPRVEAGTAIGTLRPELCAKLGCGPIRVIAGASH 240 + L A G + + R+G+P RL V GT +G L P + G G V+A A+H Sbjct: 293 TQLY-AAGGGWARALIRRMGLPERLFGEVVRPGTRLGGLLPGVREDTGLGEAEVVAVATH 351 Query: 241 DTASAVASIPYADKDGAAFISCGTWSLVGMETKAPVITALSYEYGFTNEGCSGSGNRLLX 300 DTASAVA++P +D A+IS GTWSLVG+ET+ PVI+ Y FTNEG G NRLL Sbjct: 352 DTASAVAAVPARGRD-FAYISSGTWSLVGVETERPVISEEGLRYNFTNEGGFGGTNRLLK 410 Query: 301 XXXG 304 G Sbjct: 411 NVMG 414 >ref|NP_359564.1| Fucose kinase [Streptococcus pneumoniae R6] pir||B98118 rhamnulokinase (EC 2.7.1.5) [imported] - Streptococcus pneumoniae (strain R6) gb|AAL00775.1| Fucose kinase [Streptococcus pneumoniae R6] Length = 482 Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 119/287 (41%), Positives = 174/287 (60%), Gaps = 7/287 (2%) Query: 3 KLKKLLAVDLGASSGRVILGTYDGSRIVTEELHRFANTPVEAGGHLYWNVPELLKEIKQG 62 K++ +LA+DLGA+SGR I+G +++V EE++RF+N P+ GHL W++ LL +I + Sbjct: 15 KMEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILES 74 Query: 63 ILLAVQAGNEIASLSVDTWGVDYGFVDHAGKLLNAPHHYRDQRVGKYRARXXXXXXXXXQ 122 I LA +I S+ +DTWGVD+G +D+ GKLL P HYRD+R Sbjct: 75 IRLA-NTSYKILSIGIDTWGVDFGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKL 133 Query: 123 FRLTGNQPDPINTVYQLFADLQENPLLQEQVDHILMMPDLFLYLLSGASSAERTILSTSG 182 + TGNQ INT++QLF QE+P + + IL+MPDLF YLL+G + E++I ST+ Sbjct: 134 YSETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFNYLLTGKFATEKSIASTTQ 193 Query: 183 LLDAVTGEPSSEVFGRLGIPTRLIPPRVEAGTAIGTLRPELCAKLGCGPIRVIAGASHDT 242 L D + + + + + L+P V G +G ++ E G G I V+ SHDT Sbjct: 194 LFDPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKEE----YGLGDIPVVNVCSHDT 249 Query: 243 ASAVASIPYADKDGAAFISCGTWSLVGMETKAPVITALSYEYGFTNE 289 ASA+ S+P +G+ FIS GTWSLVG+E +P++T S+ YGFTNE Sbjct: 250 ASAIVSVP--KTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNE 294 >ref|NP_346581.1| L-fuculose kinase fucK, putative [Streptococcus pneumoniae TIGR4] pir||D95253 L-fuculose kinase fucK, probable [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK76221.1| L-fuculose kinase fucK, putative [Streptococcus pneumoniae TIGR4] Length = 467 Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/286 (41%), Positives = 173/286 (60%), Gaps = 7/286 (2%) Query: 4 LKKLLAVDLGASSGRVILGTYDGSRIVTEELHRFANTPVEAGGHLYWNVPELLKEIKQGI 63 ++ +LA+DLGA+SGR I+G +++V EE++RF+N P+ GHL W++ LL +I + I Sbjct: 1 MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESI 60 Query: 64 LLAVQAGNEIASLSVDTWGVDYGFVDHAGKLLNAPHHYRDQRVGKYRARXXXXXXXXXQF 123 LA +I S+ +DTWGVD+G +D+ GKLL P HYRD+R + Sbjct: 61 RLA-NTSYKILSIGIDTWGVDFGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLY 119 Query: 124 RLTGNQPDPINTVYQLFADLQENPLLQEQVDHILMMPDLFLYLLSGASSAERTILSTSGL 183 TGNQ INT++QLF QE+P + + IL+MPDLF YLL+G + E++I ST+ L Sbjct: 120 SETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFNYLLTGKFATEKSIASTTQL 179 Query: 184 LDAVTGEPSSEVFGRLGIPTRLIPPRVEAGTAIGTLRPELCAKLGCGPIRVIAGASHDTA 243 D + + + + + L+P V G +G ++ E G G I V+ SHDTA Sbjct: 180 FDPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKEE----YGLGDIPVVNVCSHDTA 235 Query: 244 SAVASIPYADKDGAAFISCGTWSLVGMETKAPVITALSYEYGFTNE 289 SA+ S+P +G+ FIS GTWSLVG+E +P++T S+ YGFTNE Sbjct: 236 SAIVSVP--KTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNE 279 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 442,820,604 Number of extensions: 17961103 Number of successful extensions: 40680 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 40582 Number of HSP's successfully gapped: 61 Length of query: 310 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 185 Effective length of database: 417,850,203 Effective search space: 77302287555 Effective search space used: 77302287555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)