BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0029.p (411 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831727.1| Two component system histidine kinase [Bacillus... 253 5e-66 ref|NP_978357.1| sensor histidine kinase [Bacillus cereus ATCC 1... 252 1e-65 ref|NP_844364.1| sensor histidine kinase [Bacillus anthracis str... 244 3e-63 ref|NP_655820.1| HATPase_c, Histidine kinase-, DNA gyrase B-, ph... 244 4e-63 ref|NP_832968.1| Two component system histidine kinase [Bacillus... 241 2e-62 >ref|NP_831727.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gb|AAP08928.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 348 Score = 253 bits (646), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 125/260 (48%), Positives = 178/260 (68%), Gaps = 2/260 (0%) Query: 150 QMAQGHFDMQLRTNRK--DEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPLTSI 207 ++A+G F +++R K EIG L S N+M EL +++MR+EFV+NVSHEIQSPLTSI Sbjct: 84 KIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELNTMEKMRQEFVSNVSHEIQSPLTSI 143 Query: 208 SGFAKALKQKRMSEESRMHYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFRLDE 267 GFA+AL+ +SEE R HYLT QNLL+L+ L+ + + + ++RLD+ Sbjct: 144 KGFARALQDDNLSEEKRKHYLTIIETETTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQ 203 Query: 268 QLRKVVIALEPQWSGKEIAVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRICIR 327 QL+++V+ EP W+ KEI +ELDLE V V AD++ +SQVW NL+ NSIKFTP G I I+ Sbjct: 204 QLKQIVLNSEPLWAEKEIELELDLEKVYVIADQESMSQVWINLIHNSIKFTPSGGTITIQ 263 Query: 328 VYAGGRSAVVRITDNGIGIPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVELHE 387 + VRI D+GIGI E+Q+ IF+ F+K D +R+RA G+GLGL+IVK +++LH Sbjct: 264 LKEHETVVEVRIRDSGIGISEEQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHH 323 Query: 388 GEIRADEEPGGGSVFTVKLP 407 GEI+ + E G G+ F V++P Sbjct: 324 GEIKVESEEGKGTEFIVRMP 343 >ref|NP_978357.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gb|AAS40965.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 351 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/263 (47%), Positives = 180/263 (68%), Gaps = 2/263 (0%) Query: 150 QMAQGHFDMQLRTNRK--DEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPLTSI 207 ++A+G F +++R K EIG L S N+M EL +++MR+EFV+NVSHEIQSPLTSI Sbjct: 87 KIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSI 146 Query: 208 SGFAKALKQKRMSEESRMHYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFRLDE 267 GFA+AL+ +SEE R HYLT QNLL+L+ L+ + + + A +RLD+ Sbjct: 147 KGFARALQDNNLSEEKREHYLTIIETETTRLSKLSQNLLKLTLLESEEYTPERATYRLDQ 206 Query: 268 QLRKVVIALEPQWSGKEIAVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRICIR 327 QL+++V+ EP W+ KEI +EL+LE V + AD++ +SQVW NL+ NSIKFTP G I I+ Sbjct: 207 QLKQIVLNSEPLWAEKEIELELNLEKVHITADQESMSQVWINLIHNSIKFTPNGGTITIQ 266 Query: 328 VYAGGRSAVVRITDNGIGIPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVELHE 387 + + VRI D+GIGI ++Q+ IF+ F+K D +R+RA G+GLGL+IVK +++LH+ Sbjct: 267 LKEYEKVVEVRIRDSGIGISKEQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQ 326 Query: 388 GEIRADEEPGGGSVFTVKLPLRK 410 GEI+ + E G G+ F V +P K Sbjct: 327 GEIKVESEEGKGTEFIVCIPKYK 349 >ref|NP_844364.1| sensor histidine kinase [Bacillus anthracis str. Ames] gb|AAP25850.1| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 351 Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/260 (46%), Positives = 173/260 (66%), Gaps = 2/260 (0%) Query: 150 QMAQGHFDMQLRTNRK--DEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPLTSI 207 ++A+G F +++R K EIG L S N+M EL +++MR+EFV+NVSHEIQSPLTSI Sbjct: 87 KIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSI 146 Query: 208 SGFAKALKQKRMSEESRMHYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFRLDE 267 GFA+AL+ + EE R HYLT QNLL+L+ L+ + + + +RLD+ Sbjct: 147 KGFARALQDTNLPEEKRKHYLTIIETETTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQ 206 Query: 268 QLRKVVIALEPQWSGKEIAVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRICIR 327 QL+++V+ EP W+ KEI ++LDLE V + AD++ +SQVW NL+ NSIKFTP G I I+ Sbjct: 207 QLKQIVLNSEPLWAEKEIELDLDLEKVHITADQESMSQVWINLIHNSIKFTPSSGTISIK 266 Query: 328 VYAGGRSAVVRITDNGIGIPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVELHE 387 + VRI D G GI E+Q+ IF+ F+K D +R+RA G+GLGL+IVK +++LH+ Sbjct: 267 LKEYETLVEVRIRDTGSGISEEQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQ 326 Query: 388 GEIRADEEPGGGSVFTVKLP 407 GEI+ + E G G+ V +P Sbjct: 327 GEIKVESEEGNGTECIVCIP 346 >ref|NP_655820.1| HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase [Bacillus anthracis A2012] Length = 357 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/260 (46%), Positives = 173/260 (66%), Gaps = 2/260 (0%) Query: 150 QMAQGHFDMQLRTNRK--DEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPLTSI 207 ++A+G F +++R K EIG L S N+M EL +++MR+EFV+NVSHEIQSPLTSI Sbjct: 93 KIAKGDFSVKIRNEEKYDGEIGVLVKSINDMTDELNAMEKMRQEFVSNVSHEIQSPLTSI 152 Query: 208 SGFAKALKQKRMSEESRMHYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFRLDE 267 GFA+AL+ + EE R HYLT QNLL+L+ L+ + + + +RLD+ Sbjct: 153 KGFARALQDTNLPEEKRKHYLTIIETETTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQ 212 Query: 268 QLRKVVIALEPQWSGKEIAVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRICIR 327 QL+++V+ EP W+ KEI ++LDLE V + AD++ +SQVW NL+ NSIKFTP G I I+ Sbjct: 213 QLKQIVLNSEPLWAEKEIELDLDLEKVHITADQESMSQVWINLIHNSIKFTPSSGTISIK 272 Query: 328 VYAGGRSAVVRITDNGIGIPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVELHE 387 + VRI D G GI E+Q+ IF+ F+K D +R+RA G+GLGL+IVK +++LH+ Sbjct: 273 LKEYETLVEVRIRDTGSGISEEQKQHIFERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQ 332 Query: 388 GEIRADEEPGGGSVFTVKLP 407 GEI+ + E G G+ V +P Sbjct: 333 GEIKVESEEGNGTECIVCIP 352 >ref|NP_832968.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579] Length = 458 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 188/323 (58%) Query: 85 VGLPFPVDGQSYALFVMLKGNELWLQSSKEVNTELLTVFLIGXXXXXXAARSIVKPLLRL 144 VG+P + YALF+ + + + L + L+ AA IV+P+ + Sbjct: 135 VGVPVKHGDKQYALFIRPDIQNQFGEMRIFLAVLLGFIVLLSIIFIAIAAGYIVRPIRKF 194 Query: 145 RDAAGQMAQGHFDMQLRTNRKDEIGQLNTSFNEMAQELAKLDRMRREFVANVSHEIQSPL 204 A ++A G + ++L RKDEIG L+TSF +M + + +LD MR+EFV+NVSHE QSPL Sbjct: 195 TKATQKIASGEYKIELDVKRKDEIGTLSTSFQKMTKSIKELDEMRQEFVSNVSHEFQSPL 254 Query: 205 TSISGFAKALKQKRMSEESRMHYLTXXXXXXXXXXXXXQNLLRLSSLQHDRHPAQPAAFR 264 +SI GF+K L+ ++MSEE R HYL + LL L+SL + Q F Sbjct: 255 SSIQGFSKTLQTEKMSEEERNHYLQIIEGESKRMSSLCKQLLTLASLDKEEKVLQIKDFS 314 Query: 265 LDEQLRKVVIALEPQWSGKEIAVELDLEPVTVHADEDQLSQVWTNLLGNSIKFTPVHGRI 324 L +Q++ V+ LE +W K+IAVE D+ +T+ DE+ L QVW+N+ NSIKF+ G I Sbjct: 315 LQKQIKDVIFMLEWKWREKDIAVEFDVPDITIQGDENLLHQVWSNIFTNSIKFSNDGGTI 374 Query: 325 CIRVYAGGRSAVVRITDNGIGIPEDQRTDIFKPFHKVDKARDRAVSGNGLGLSIVKLIVE 384 V S ++ I+DNGIG+ +++ IF F+KVD AR R V G+GLGLSIV+ IVE Sbjct: 375 EFFVEELESSVIISISDNGIGMEKEEMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVE 434 Query: 385 LHEGEIRADEEPGGGSVFTVKLP 407 LH+G + G G+ V+LP Sbjct: 435 LHKGTVSVYSTKGEGTTVRVELP 457 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 555,231,341 Number of extensions: 22132306 Number of successful extensions: 68998 Number of sequences better than 1.0e-05: 4938 Number of HSP's gapped: 63182 Number of HSP's successfully gapped: 4971 Length of query: 411 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 283 Effective length of database: 409,704,906 Effective search space: 115946488398 Effective search space used: 115946488398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)