BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0017.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_929960.1| hypothetical protein [Photorhabdus luminescens ... 107 8e-23 ref|NP_416303.1| hypothetical protein b1789 [Escherichia coli K1... 106 2e-22 ref|NP_288225.1| orf, hypothetical protein [Escherichia coli O15... 106 2e-22 ref|NP_668744.1| hypothetical protein y1423 [Yersinia pestis KIM... 105 4e-22 ref|NP_406547.1| putative membrane protein [Yersinia pestis] >gi... 105 4e-22 >ref|NP_929960.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15100.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 150 Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 56/113 (49%), Positives = 71/113 (62%) Query: 34 KNSPVTIAXXXXXXXXXXXXQQTFPWLEKYXXXXXXXXXXXXVMTPLASGKISLDTIWHS 93 N VT+A FPW+EKY VM P+ASGKI++ + +S Sbjct: 22 HNMTVTLAMLLLLVIRITPLNHFFPWVEKYGLTIGVLILTVGVMAPIASGKITVQAVLNS 81 Query: 94 FLHWKSLAAIGIGMLVAYLGGRGALLMGSQPTVVAGLLIGTVLGVAFFKGVPV 146 F++WKSL AI IG+LV++LG RG LM +QP+ VAGLL+GTVLGVA FKGVPV Sbjct: 82 FMNWKSLLAIVIGVLVSWLGSRGVSLMSNQPSTVAGLLVGTVLGVALFKGVPV 134 >ref|NP_416303.1| hypothetical protein b1789 [Escherichia coli K12] ref|NP_707327.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] ref|NP_754088.1| Hypothetical protein yeaL [Escherichia coli CFT073] ref|NP_837122.1| hypothetical protein S1550 [Shigella flexneri 2a str. 2457T] sp|P76240|YEAL_ECOLI Hypothetical protein yeaL pir||E64939 hypothetical protein b1789 - Escherichia coli (strain K-12) dbj|BAA15588.1| ORF_ID:o331#5~similar to [SwissProt Accession Number P44110] [Escherichia coli] dbj|BAA15590.1| ORF_ID:o331#5~similar to [SwissProt Accession Number P44110] [Escherichia coli] gb|AAC74859.1| orf, hypothetical protein [Escherichia coli K12] gb|AAN43034.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gb|AAN80653.1| Hypothetical protein yeaL [Escherichia coli CFT073] gb|AAP16929.1| hypothetical protein S1550 [Shigella flexneri 2a str. 2457T] Length = 148 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/90 (57%), Positives = 65/90 (72%) Query: 57 FPWLEKYXXXXXXXXXXXXVMTPLASGKISLDTIWHSFLHWKSLAAIGIGMLVAYLGGRG 116 FPW+EK VM P+ASG + T+ HSFL+WKSL AI +G++V++LGGRG Sbjct: 43 FPWIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG 102 Query: 117 ALLMGSQPTVVAGLLIGTVLGVAFFKGVPV 146 LMGSQP +VAGLL+GTVLGVA F+GVPV Sbjct: 103 VTLMGSQPQLVAGLLVGTVLGVALFRGVPV 132 >ref|NP_288225.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933] ref|NP_310525.1| hypothetical protein ECs2498 [Escherichia coli O157:H7] pir||B90941 hypothetical protein ECs2498 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) pir||F85789 hypothetical protein yeaL [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gb|AAG56778.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933] dbj|BAB35921.1| hypothetical protein [Escherichia coli O157:H7] Length = 148 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/90 (57%), Positives = 65/90 (72%) Query: 57 FPWLEKYXXXXXXXXXXXXVMTPLASGKISLDTIWHSFLHWKSLAAIGIGMLVAYLGGRG 116 FPW+EK VM P+ASG + T+ HSFL+WKSL AI +G++V++LGGRG Sbjct: 43 FPWIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG 102 Query: 117 ALLMGSQPTVVAGLLIGTVLGVAFFKGVPV 146 LMGSQP +VAGLL+GTVLGVA F+GVPV Sbjct: 103 VTLMGSQPQLVAGLLVGTVLGVALFRGVPV 132 >ref|NP_668744.1| hypothetical protein y1423 [Yersinia pestis KIM] gb|AAM84995.1| hypothetical protein [Yersinia pestis KIM] Length = 157 Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/90 (58%), Positives = 64/90 (71%) Query: 57 FPWLEKYXXXXXXXXXXXXVMTPLASGKISLDTIWHSFLHWKSLAAIGIGMLVAYLGGRG 116 FPW+EKY VM P+ASGKIS + HSF+ WKS+ AI +G+ V++LGGRG Sbjct: 52 FPWVEKYGLTIGVLILTIGVMAPIASGKISASEVLHSFVQWKSILAIVVGVAVSWLGGRG 111 Query: 117 ALLMGSQPTVVAGLLIGTVLGVAFFKGVPV 146 LM QP+VVAGLL+GTVLGVA FKGVPV Sbjct: 112 VSLMTHQPSVVAGLLVGTVLGVALFKGVPV 141 >ref|NP_406547.1| putative membrane protein [Yersinia pestis] ref|NP_993992.1| putative membrane protein [Yersinia pestis biovar Mediaevails str. 91001] pir||AH0371 probable membrane protein YPO3057 [imported] - Yersinia pestis (strain CO92) emb|CAC92299.1| putative membrane protein [Yersinia pestis CO92] gb|AAS62869.1| putative membrane protein [Yersinia pestis biovar Mediaevails str. 91001] Length = 150 Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/90 (58%), Positives = 64/90 (71%) Query: 57 FPWLEKYXXXXXXXXXXXXVMTPLASGKISLDTIWHSFLHWKSLAAIGIGMLVAYLGGRG 116 FPW+EKY VM P+ASGKIS + HSF+ WKS+ AI +G+ V++LGGRG Sbjct: 45 FPWVEKYGLTIGVLILTIGVMAPIASGKISASEVLHSFVQWKSILAIVVGVAVSWLGGRG 104 Query: 117 ALLMGSQPTVVAGLLIGTVLGVAFFKGVPV 146 LM QP+VVAGLL+GTVLGVA FKGVPV Sbjct: 105 VSLMTHQPSVVAGLLVGTVLGVALFKGVPV 134 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 154,553,620 Number of extensions: 4699333 Number of successful extensions: 17782 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 17778 Number of HSP's successfully gapped: 19 Length of query: 162 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 46 Effective length of database: 442,286,094 Effective search space: 20345160324 Effective search space used: 20345160324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 121 (51.2 bits)