BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0015.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241543.1| BH0677~unknown conserved protein [Bacillus halo... 154 9e-37 ref|NP_691766.1| hypothetical protein OB0845 [Oceanobacillus ihe... 136 3e-31 ref|NP_843576.1| conserved hypothetical protein [Bacillus anthra... 107 1e-22 ref|NP_654994.1| hypothetical protein predicted by GeneMark [Bac... 107 2e-22 ref|NP_830866.1| Transcriptional regulator [Bacillus cereus ATCC... 106 2e-22 >ref|NP_241543.1| BH0677~unknown conserved protein [Bacillus halodurans] pir||E83734 hypothetical protein BH0677 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04396.1| BH0677~unknown conserved protein [Bacillus halodurans] Length = 189 Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 75/154 (48%), Positives = 107/154 (69%), Gaps = 4/154 (2%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFIFAKGVEEME 96 KL L+ PT++HH +KLRE ++ +RR+KNT+YF L+ + ++ + A I G +EM Sbjct: 38 KLGLTPPTISHHLSKLREIDVVYQRREKNTIYFYLDEKKLERMAGA----ILMIGGDEMF 93 Query: 97 EVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEINEFIK 156 D + K V++NF DG ++ +P+Q KKKLI L+YM +E G VY+EKEINE I+ Sbjct: 94 NFQVDDQEKVRVIKNFTLPDGRVKTLPAQRKKKLIILEYMLRGIEQGRVYSEKEINEHIR 153 Query: 157 PFHEDYATIRREFIMHQFMYRENDHYELNPPELW 190 FHED+AT+RREF+M QFM+R+N YELNP E+W Sbjct: 154 QFHEDFATVRREFVMCQFMFRKNGQYELNPKEMW 187 >ref|NP_691766.1| hypothetical protein OB0845 [Oceanobacillus iheyensis HTE831] dbj|BAC12801.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 190 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 96/154 (62%), Gaps = 3/154 (1%) Query: 37 KLNLSQPTVTHHAAKLREAALIKERRDKNTVYFALNPEFIQAGSEASLKFIFAKGVEEME 96 KL L PT++HH KL+E ++ +RRDKNT+YF LN + ++ +L G + Sbjct: 38 KLGLKPPTISHHLTKLKEIDVVYQRRDKNTIYFYLNDDKLE---RMALAITRIGGDDMFG 94 Query: 97 EVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEINEFIK 156 + + K +V++NF G + +P+Q KKKLI L+YM L+ G Y E E+NE+I Sbjct: 95 KFDITDQEKTNVIKNFVDSKGRIETLPAQRKKKLIILEYMIRGLKHGQTYKETEMNEYIM 154 Query: 157 PFHEDYATIRREFIMHQFMYRENDHYELNPPELW 190 +HEDYAT+RRE +M FM+R+N YELNP E+W Sbjct: 155 QYHEDYATVRRELVMTHFMFRQNGIYELNPVEMW 188 >ref|NP_843576.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25062.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 106 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 72/106 (67%) Query: 92 VEEMEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEI 151 +E+ + + + +++ +RNFF K+ L+ IP Q KKKL+ L+++ KL YTEKE+ Sbjct: 1 MEDNKMTESEMKFRDATIRNFFDKEDRLKSIPGQKKKKLVLLEHLISKLNAANQYTEKEM 60 Query: 152 NEFIKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWENVK 197 N FIK +H+D+ TIRREFI+H FM RE + Y +N E+WT WE +K Sbjct: 61 NTFIKQYHDDFCTIRREFIVHGFMDREANMYHINGREVWTKWEELK 106 >ref|NP_654994.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 101 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 47/98 (47%), Positives = 68/98 (69%) Query: 100 PDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEINEFIKPFH 159 + + +++ +RNFF K+ L+ IP Q KKKL+ L+++ KL YTEKE+N FIK +H Sbjct: 4 SEMKFRDATIRNFFDKEDRLKSIPGQKKKKLVLLEHLISKLNAANQYTEKEMNTFIKQYH 63 Query: 160 EDYATIRREFIMHQFMYRENDHYELNPPELWTHWENVK 197 +D+ TIRREFI+H FM RE + Y +N E+WT WE +K Sbjct: 64 DDFCTIRREFIVHGFMDREANMYHINGREVWTKWEELK 101 >ref|NP_830866.1| Transcriptional regulator [Bacillus cereus ATCC 14579] gb|AAP08067.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 107 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/106 (45%), Positives = 72/106 (67%) Query: 92 VEEMEEVSPDARLKESVLRNFFAKDGHLRQIPSQYKKKLIALQYMAEKLEPGVVYTEKEI 151 +E+ + + + +++ +RNFF K+ L+ IP Q KKKL+ L+++ KL YTEKEI Sbjct: 2 MEDNKMTESEMKFRDTTIRNFFDKEDRLKSIPGQKKKKLVLLEHLISKLNAENQYTEKEI 61 Query: 152 NEFIKPFHEDYATIRREFIMHQFMYRENDHYELNPPELWTHWENVK 197 N FIK +H+D+ TIRREFI+ FM RE++ Y +N E+WT WE +K Sbjct: 62 NTFIKQYHDDFCTIRREFIVQGFMNREDNMYCINGREVWTKWEELK 107 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 262,343,292 Number of extensions: 9730300 Number of successful extensions: 26480 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 26478 Number of HSP's successfully gapped: 16 Length of query: 197 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 78 Effective length of database: 434,140,797 Effective search space: 33862982166 Effective search space used: 33862982166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)