BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0014.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183620.1| hypothetical protein Exigu094501 [Exiguobacte... 93 2e-18 ref|NP_831780.1| hypothetical protein [Bacillus cereus ATCC 1457... 61 8e-09 ref|NP_844418.1| hypothetical protein [Bacillus anthracis str. A... 59 4e-08 ref|NP_978407.1| hypothetical protein BCE2094 [Bacillus cereus A... 58 8e-08 ref|NP_655878.1| hypothetical protein predicted by GeneMark [Bac... 53 2e-06 >ref|ZP_00183620.1| hypothetical protein Exigu094501 [Exiguobacterium sp. 255-15] Length = 154 Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 81/144 (56%) Query: 5 RAKKNSPTVPLTVTLPQIKQAVRQFEEDMPAPINRTALIMEDKSIDLSRLKRYLGGVPEQ 64 +AK+ +P VTL ++K+A FE +P NRT L+ +++ ID++RL +LG Q Sbjct: 9 QAKEETPLPVRDVTLDEVKRATHDFELALPKGTNRTILLDQEQRIDMARLAPHLGVRSTQ 68 Query: 65 KFYMSRETFEIFEESDKLVPYYLDLVQSAVDNYISDTGKLPLVEDAWLPEVHYRLLATER 124 FYMSRETF I E D+ Y +D VQ AVD Y KLPL + +V L + Sbjct: 69 VFYMSRETFAIMEAKDRATVYEMDHVQVAVDRYFDKERKLPLKPYSKTFQVDCAKLFEQG 128 Query: 125 YLKETPPFPLYITEEEMMLTHRPE 148 YL+E P Y+ +E M+++ P+ Sbjct: 129 YLRELPHHTYYLVDESMIVSLEPK 152 >ref|NP_831780.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP08981.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 151 Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 17 VTLPQIKQAVRQFEEDMPAPINRTALIMEDKSIDLSRLKRYLGGVPEQKFYMSRETFEIF 76 +T +++QA+ QF E A I T L+ ED +++ LK YL P F +++ET E+F Sbjct: 14 ITKDELEQAMAQFLE-TNANIVYTVLVNEDYTVNYDLLKPYLPAFPTNDFLITKETLEVF 72 Query: 77 EESDKLVPYY--LDLVQSAVDNYISDTGKLPLVEDAWLPEVHYRLLATER---YLKETPP 131 E + + + +D+VQ AVD Y+++ P+VE + RL+ + YL + Sbjct: 73 EHTAENLSLVKEIDVVQKAVDQYVTEKEMFPIVEGS-----EDRLICGMKLGPYLNRSLK 127 Query: 132 FPLYITEEEMMLTHRPE 148 LYI+E+ +++ +P+ Sbjct: 128 RDLYISEKHYLVSSKPD 144 >ref|NP_844418.1| hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25904.1| hypothetical protein BA2014 [Bacillus anthracis str. Ames] Length = 151 Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 17 VTLPQIKQAVRQFEEDMPAPINRTALIMEDKSIDLSRLKRYLGGVPEQKFYMSRETFEIF 76 +T +++QA+ QF E A I T L+ +D +++ LK YL P F +++ET E+F Sbjct: 14 ITKDELEQAMAQFLEK-NANIVYTVLVNDDYTVNYDLLKPYLPAFPTNIFLITKETLEVF 72 Query: 77 EESDKLVPYY--LDLVQSAVDNYISDTGKLPLVEDAWLPEVHYRLLATER---YLKETPP 131 E +++ + +D+VQ AVD Y+++ P+VE + RL+ + YL Sbjct: 73 EHTEENLNLVKEIDIVQKAVDQYVTEKEMFPIVEGS-----EDRLICGMKLGPYLDRILK 127 Query: 132 FPLYITEEEMMLTHRPE 148 LYI+E+ +++ +P+ Sbjct: 128 RDLYISEKHYLVSSKPD 144 >ref|NP_978407.1| hypothetical protein BCE2094 [Bacillus cereus ATCC 10987] gb|AAS41015.1| hypothetical protein BCE2094 [Bacillus cereus ATCC 10987] Length = 151 Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 17 VTLPQIKQAVRQFEEDMPAPINRTALIMEDKSIDLSRLKRYLGGVPEQKFYMSRETFEIF 76 +T +++QA+ +F E A I T L+ +D +++ LK YL P F +++ET E+F Sbjct: 14 ITKDELEQAMAKFLEK-NANIVYTVLVNDDYTVNYDLLKPYLPAFPTNHFLITKETLEVF 72 Query: 77 EESDKLVPYY--LDLVQSAVDNYISDTGKLPLVEDAWLPEVHYRLLATER---YLKETPP 131 E +++ + +D+VQ AVD Y+++ P+VE + RL+ + YL Sbjct: 73 EHTEENLNLVKEIDIVQKAVDQYVTEKEMFPIVEGS-----EDRLICGMKLGPYLDRILK 127 Query: 132 FPLYITEEEMMLTHRPE 148 LYI+E+ +++ +P+ Sbjct: 128 RDLYISEKHYLVSSKPD 144 >ref|NP_655878.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 129 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 10/119 (8%) Query: 35 APINRTALIMEDKSIDLSRLKRYLGGVPEQKFYMSRETFEIFEESDKLVPYY--LDLVQS 92 A I T L+ +D +++ LK YL P F +++ET E+FE +++ + +D+VQ Sbjct: 9 ANIVYTVLVNDDYTVNYDLLKPYLPAFPTNIFLITKETLEVFEHTEENLNLVKEIDIVQK 68 Query: 93 AVDNYISDTGKLPLVEDAWLPEVHYRLLATER---YLKETPPFPLYITEEEMMLTHRPE 148 AVD Y+++ P+VE + RL+ + YL LYI+E+ +++ +P+ Sbjct: 69 AVDQYVTEKEMFPIVEGS-----EDRLICGMKLGPYLDRILKRDLYISEKHYLVSSKPD 122 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 229,976,596 Number of extensions: 9053188 Number of successful extensions: 23947 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 23944 Number of HSP's successfully gapped: 5 Length of query: 152 Length of database: 757,237,578 Length adjustment: 111 Effective length of query: 41 Effective length of database: 455,861,589 Effective search space: 18690325149 Effective search space used: 18690325149 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)