BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0450.0011.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00097992.1| COG1162: Predicted GTPases [Desulfitobacteriu... 360 2e-98 ref|NP_978400.1| conserved hypothetical protein TIGR00157 [Bacil... 339 6e-92 ref|NP_844412.1| conserved hypothetical protein TIGR00157 [Bacil... 338 2e-91 ref|NP_655870.1| MMR_HSR1, GTPase of unknown function [Bacillus ... 337 2e-91 ref|NP_831773.1| GTPase [Bacillus cereus ATCC 14579] >gi|2989569... 335 8e-91 >ref|ZP_00097992.1| COG1162: Predicted GTPases [Desulfitobacterium hafniense] Length = 376 Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/335 (51%), Positives = 234/335 (69%), Gaps = 10/335 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +++ GWN WQ + L G+ PGR+ ++ +++V E GE W ++GK+R++ Sbjct: 18 LKELGWNDAWQELFQPYLKS----GFHPGRVAAEYRDRFKVWTEFGEVWAVVSGKMRYTA 73 Query: 63 TDSGEYPAVGDWVVL-----ALQDGGEH-AVIHGVLPRHSVISRKVAGNTLEEQIVASNV 116 + ++PAVGDWVVL +++D + +I +LPR S SRK AG T EQIVA+N+ Sbjct: 74 LERSDFPAVGDWVVLEGRAESIKDHEDQDVIIQSILPRKSKFSRKAAGKTSAEQIVATNI 133 Query: 117 DTLFLVSALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVA 176 DT+FLV+ALN DFNVRR+ERYL +AW SGANPV++L+K+DLC D + K+++++ APGV Sbjct: 134 DTVFLVNALNFDFNVRRIERYLTLAWESGANPVLVLSKTDLCDDVQEKVSQVQDAAPGVD 193 Query: 177 IHAVSALLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRG 236 I +S GDG + PYI GQT+AL GSSG GKST+VN+L GQ +QLT +VRE DSRG Sbjct: 194 ILPISCATGDGVSAIAPYIRQGQTIALLGSSGAGKSTLVNYLLGQNVQLTYEVREKDSRG 253 Query: 237 RHTTTHRELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHE 296 RHTTT RELF+LP GG+++DTPGMRE+QL+ GL AF DI A CRF DC+HE E Sbjct: 254 RHTTTSRELFLLPQGGVLIDTPGMREIQLFGSGEGLSEAFEDIAAYAGNCRFSDCQHESE 313 Query: 297 EGCAVLEAVASGELEEKRLLNYRKTQRELQYQSSK 331 GCAV +A+A G L E+R +++K QRE +Y S K Sbjct: 314 PGCAVQKAIAEGMLSEERYESFKKLQREARYISRK 348 >ref|NP_978400.1| conserved hypothetical protein TIGR00157 [Bacillus cereus ATCC 10987] gb|AAS41008.1| conserved hypothetical protein TIGR00157 [Bacillus cereus ATCC 10987] Length = 349 Score = 339 bits (870), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 166/330 (50%), Positives = 217/330 (65%), Gaps = 8/330 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +E +GW+ ++ + E + GRI+ + YR++ +GE EL+GK RH Sbjct: 6 LESFGWDSFFEEQAVE--------NFEVGRILLEHKHIYRIICNDGEYMAELSGKFRHEA 57 Query: 63 TDSGEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLV 122 G+YPAVGDWV + + + A+IH + PR S SR+ AG EEQ++A+NVD LFLV Sbjct: 58 VTKGDYPAVGDWVYIKKIENEKKAIIHRIFPRRSSFSRQEAGTRTEEQVIAANVDYLFLV 117 Query: 123 SALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSA 182 +ALN DFNVRRMERYL++A+ SGA PVI+LTKS LC D E KI E E VA GV I V + Sbjct: 118 NALNHDFNVRRMERYLLLAYESGAMPVIVLTKSSLCEDVEQKIVETEAVAIGVPIFVVDS 177 Query: 183 LLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTH 242 L G E L ++ G+T+AL GSSG GKST++N L G + T D+RE+DS+GRHTTTH Sbjct: 178 LEHTGIESLQQFVSSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSKGRHTTTH 237 Query: 243 RELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVL 302 RELF LP G +++DTPGMRELQLWE + F DI LA CRF DC+HE+E GCAV Sbjct: 238 RELFRLPSGSLVIDTPGMRELQLWEGSDAIQTTFSDIEELAKTCRFRDCKHENEPGCAVH 297 Query: 303 EAVASGELEEKRLLNYRKTQRELQYQSSKE 332 A+ +G + RL +Y+K QREL Y K+ Sbjct: 298 SAIDNGIMTINRLQSYKKLQRELAYFIRKQ 327 >ref|NP_844412.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str. Ames] gb|AAP25898.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str. Ames] Length = 364 Score = 338 bits (866), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 218/330 (66%), Gaps = 8/330 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +E +GW+ ++ + E + GRI+ + YR++ +GE EL+GK RH Sbjct: 21 LESFGWDSFFEEQAVE--------NFEVGRILLEHKHIYRIICNDGEYMAELSGKFRHEA 72 Query: 63 TDSGEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLV 122 G+YPAVGDWV + + + A+IH + PR S SR+ AG EEQ++A+NVD LFLV Sbjct: 73 VTKGDYPAVGDWVYIKKIENEKKAIIHRIFPRRSSFSRQEAGTRTEEQVIAANVDYLFLV 132 Query: 123 SALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSA 182 +ALN DFNVRR+ERYL++A+ SGA PVI+LTKS LC D E KI E E VA GV I V + Sbjct: 133 NALNHDFNVRRIERYLLLAYESGAMPVIVLTKSSLCEDVEQKIVETEAVAIGVPIFVVDS 192 Query: 183 LLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTH 242 L G E L ++ G+T+AL GSSG GKST++N L G + T D+RE+DS+GRHTTTH Sbjct: 193 LEHTGIESLQQFVTSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSKGRHTTTH 252 Query: 243 RELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVL 302 RELF LP G +++DTPGMRELQLWE + F DI LA CRF DC+HE+E GCAV Sbjct: 253 RELFRLPSGSLVIDTPGMRELQLWEGSDAIQTTFSDIEELAKTCRFRDCKHENEPGCAVH 312 Query: 303 EAVASGELEEKRLLNYRKTQRELQYQSSKE 332 +A+ +G + RL +Y+K QREL Y K+ Sbjct: 313 KAIDNGIITINRLQSYKKLQRELAYFMRKQ 342 >ref|NP_655870.1| MMR_HSR1, GTPase of unknown function [Bacillus anthracis A2012] Length = 349 Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 218/330 (66%), Gaps = 8/330 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +E +GW+ ++ + E + GRI+ + YR++ +GE EL+GK RH Sbjct: 6 LESFGWDSFFEEQAVE--------NFEVGRILLEHKHIYRIICNDGEYMAELSGKFRHEA 57 Query: 63 TDSGEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLV 122 G+YPAVGDWV + + + A+IH + PR S SR+ AG EEQ++A+NVD LFLV Sbjct: 58 VTKGDYPAVGDWVYIKKIENEKKAIIHRIFPRRSSFSRQEAGTRTEEQVIAANVDYLFLV 117 Query: 123 SALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSA 182 +ALN DFNVRR+ERYL++A+ SGA PVI+LTKS LC D E KI E E VA GV I V + Sbjct: 118 NALNHDFNVRRIERYLLLAYESGAMPVIVLTKSSLCEDVEQKIVETEAVAIGVPIFVVDS 177 Query: 183 LLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTH 242 L G E L ++ G+T+AL GSSG GKST++N L G + T D+RE+DS+GRHTTTH Sbjct: 178 LEHTGIESLQQFVTSGKTIALVGSSGVGKSTLLNALIGIEVAKTGDIREEDSKGRHTTTH 237 Query: 243 RELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVL 302 RELF LP G +++DTPGMRELQLWE + F DI LA CRF DC+HE+E GCAV Sbjct: 238 RELFRLPSGSLVIDTPGMRELQLWEGSDAIQTTFSDIEELAKTCRFRDCKHENEPGCAVH 297 Query: 303 EAVASGELEEKRLLNYRKTQRELQYQSSKE 332 +A+ +G + RL +Y+K QREL Y K+ Sbjct: 298 KAIDNGIITINRLQSYKKLQRELAYFMRKQ 327 >ref|NP_831773.1| GTPase [Bacillus cereus ATCC 14579] gb|AAP08974.1| GTPase [Bacillus cereus ATCC 14579] Length = 349 Score = 335 bits (860), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 164/330 (49%), Positives = 216/330 (65%), Gaps = 8/330 (2%) Query: 3 IEQYGWNKNWQSKWNERLTGNEGKGYVPGRIVGDFGSKYRVMAENGETWGELAGKLRHSL 62 +E +GW+ ++ + E + GRI+ + YR++ +GE EL+GK RH Sbjct: 6 LESFGWDSFFEEQAVE--------NFEVGRILLEHKHIYRIICNDGEYMAELSGKFRHEA 57 Query: 63 TDSGEYPAVGDWVVLALQDGGEHAVIHGVLPRHSVISRKVAGNTLEEQIVASNVDTLFLV 122 G+YPAVGDWV + + + A+IH + R S SR+ AG EEQI+A+NVD LFLV Sbjct: 58 ITKGDYPAVGDWVYIKKIEDEKKAIIHRIFQRRSSFSRQEAGTRTEEQIIAANVDYLFLV 117 Query: 123 SALNDDFNVRRMERYLIMAWNSGANPVILLTKSDLCPDAEHKIAEMERVAPGVAIHAVSA 182 +ALN DFNVRRMERYL++A+ SGA PVI+LTKS +C D E KI E E +A GV I V + Sbjct: 118 NALNHDFNVRRMERYLLLAYESGAMPVIVLTKSSICNDVEQKIVETEAIAIGVPIFVVDS 177 Query: 183 LLGDGREELLPYIGIGQTVALTGSSGCGKSTMVNWLSGQTIQLTQDVREDDSRGRHTTTH 242 L G + L ++ G+T+AL GSSG GKST++N L G + T D+RE+DSRGRHTTTH Sbjct: 178 LEHTGIDSLKQFVSSGKTIALVGSSGVGKSTLLNALIGIDVAKTGDIREEDSRGRHTTTH 237 Query: 243 RELFVLPDGGIIVDTPGMRELQLWEDEGGLDLAFGDITRLAAECRFGDCRHEHEEGCAVL 302 RELF LP G +++DTPGMRELQLWE + AF DI A CRF DC+HE+E GCAV Sbjct: 238 RELFQLPSGALVIDTPGMRELQLWEGSEAIQTAFSDIEEFATTCRFRDCKHENEPGCAVY 297 Query: 303 EAVASGELEEKRLLNYRKTQRELQYQSSKE 332 A+ +G + RL +Y+K QREL Y K+ Sbjct: 298 SAIENGLITIDRLKSYKKLQRELAYFMRKQ 327 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 576,924,918 Number of extensions: 24826886 Number of successful extensions: 105930 Number of sequences better than 1.0e-05: 268 Number of HSP's gapped: 105460 Number of HSP's successfully gapped: 268 Length of query: 362 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 235 Effective length of database: 412,420,005 Effective search space: 96918701175 Effective search space used: 96918701175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)