BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0449.0005.p
         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244656.1| iron (III) dicitrate transport system (permease...   106   2e-22
emb|CAA66711.1| fbiD [Bacillus intermedius]                            88   6e-17
ref|ZP_00187381.1| hypothetical protein Rxyl159801 [Rubrobacter ...    84   7e-16
ref|ZP_00187379.1| hypothetical protein Rxyl159601 [Rubrobacter ...    84   9e-16
ref|NP_388727.1| similar to iron(III) dicitrate transport permea...    84   1e-15

>ref|NP_244656.1| iron (III) dicitrate transport system (permease) [Bacillus
           halodurans]
 pir||E84123 iron (III) dicitrate transport system (permease) BH3789 [imported]
           - Bacillus halodurans (strain C-125)
 dbj|BAB07508.1| iron (III) dicitrate transport system (permease) [Bacillus
           halodurans]
          Length = 346

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%)

Query: 3   MIRLVNPRTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGS 62
           M +L+  RTK   + FQ+ER TV    +   + +         G+ +I P DV++ +FG 
Sbjct: 1   MSKLLTVRTKSGSISFQVERRTVVVFGLLLLVSLLLFIGSLSVGSTFIPPHDVIKQLFGY 60

Query: 63  SQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
             GEYDF I TLRLPRVL A +VG+ALGV+G ILQG++RNPLA+PDIIGIT
Sbjct: 61  GTGEYDFTINTLRLPRVLLAFMVGAALGVAGLILQGIVRNPLAAPDIIGIT 111


>emb|CAA66711.1| fbiD [Bacillus intermedius]
          Length = 345

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 9/115 (7%)

Query: 3   MIRLVNPRTKKSGVYFQMERTTVWAL----AIGFALYVTAVAAGTGWGNGYISPPDVLRT 58
           M +    R+K   + FQ  + T   L    A+ F L++ ++  G    + +I P DVL  
Sbjct: 1   MAKTYTVRSKGGRISFQFSKRTFLILLLLTAVAFGLFILSLCMG----SRFIQPMDVLLH 56

Query: 59  IFGSSQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
           + G  +G   F++ TLR+PR L A+LVG+AL VSG ILQG+IRNPLASPDIIGIT
Sbjct: 57  LIGQGEGN-TFVLNTLRIPRTLLAVLVGAALAVSGLILQGLIRNPLASPDIIGIT 110


>ref|ZP_00187381.1| hypothetical protein Rxyl159801 [Rubrobacter xylanophilus DSM 9941]
          Length = 346

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 2/74 (2%)

Query: 43  TGWGNGYISPPDVLRTIFGSSQGE--YDFIIMTLRLPRVLTALLVGSALGVSGAILQGVI 100
            G G   ISPPDVLR + G + GE  Y FI+  LRLPR L A LVG+AL +SGAILQG+ 
Sbjct: 39  VGVGEYPISPPDVLRALLGLTSGEENYAFIVNALRLPRALVAFLVGAALALSGAILQGLT 98

Query: 101 RNPLASPDIIGITG 114
           RNPLA+P+I+GI  
Sbjct: 99  RNPLAAPEILGINA 112


>ref|ZP_00187379.1| hypothetical protein Rxyl159601 [Rubrobacter xylanophilus DSM 9941]
          Length = 385

 Score = 84.3 bits (207), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 53/73 (72%), Gaps = 2/73 (2%)

Query: 43  TGWGNGYISPPDVLRTIFGSSQGE--YDFIIMTLRLPRVLTALLVGSALGVSGAILQGVI 100
            G G   ISPPDVLR + G + GE  Y FI+  LRLPR L A LVG+AL +SGAILQG+ 
Sbjct: 78  VGVGEYPISPPDVLRALLGLTSGEENYAFIVNALRLPRALVAFLVGAALALSGAILQGLT 137

Query: 101 RNPLASPDIIGIT 113
           RNPLA+P+I+GI 
Sbjct: 138 RNPLAAPEILGIN 150


>ref|NP_388727.1| similar to iron(III) dicitrate transport permease [Bacillus
           subtilis]
 pir||B69800 iron(III) dicitrate transport permease homolog yfhA - Bacillus
           subtilis
 emb|CAB12675.1| yfhA [Bacillus subtilis subsp. subtilis str. 168]
 dbj|BAA24467.1| YfhA [Bacillus subtilis]
          Length = 343

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 51/71 (71%)

Query: 44  GWGNGYISPPDVLRTIFGSSQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNP 103
           G G  +I P DV +T FG+     + +IM+ R+PR+LTAL  G  L  +GAILQG++RNP
Sbjct: 34  GLGQRFIPPWDVAKTFFGAGSKLDELMIMSFRMPRILTALCAGVCLAAAGAILQGLVRNP 93

Query: 104 LASPDIIGITG 114
           LASPDIIGITG
Sbjct: 94  LASPDIIGITG 104


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 185,749,672
Number of extensions: 7083463
Number of successful extensions: 20932
Number of sequences better than 1.0e-05: 446
Number of HSP's gapped: 20923
Number of HSP's successfully gapped: 452
Length of query: 127
Length of database: 757,237,578
Length adjustment: 90
Effective length of query: 37
Effective length of database: 512,878,668
Effective search space: 18976510716
Effective search space used: 18976510716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)