BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0001.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_653533.1| tRNA-synt_1b, tRNA synthetases class I (W and Y... 696 0.0 ref|NP_981504.1| tyrosyl-tRNA synthetase [Bacillus cereus ATCC 1... 695 0.0 ref|NP_834730.1| Tyrosyl-tRNA synthetase [Bacillus cereus ATCC 1... 694 0.0 ref|NP_465123.1| tyrosyl-tRNA synthetase [Listeria monocytogenes... 592 e-168 ref|NP_470975.1| tyrosyl-tRNA synthetase [Listeria innocua] >gi|... 591 e-167 >ref|NP_653533.1| tRNA-synt_1b, tRNA synthetases class I (W and Y) [Bacillus anthracis A2012] ref|NP_847490.1| tyrosyl-tRNA synthetase [Bacillus anthracis str. Ames] gb|AAP28976.1| tyrosyl-tRNA synthetase [Bacillus anthracis str. Ames] Length = 419 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 373/419 (89%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR A+NQQTD EGLR+L K +SLYCGVDPTGDSMHIGHLIPFM++KRFQL Sbjct: 1 MNIIDELEWRGAVNQQTDEEGLRKLVEEKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGH PVILIGGATGTIGDPSGRQSER LQTLE VQ NVDALTAQMKKLF +++V+MV Sbjct: 61 AGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTH+IN+IEFLRDYGKNFSIN+MLAKD+V+SRLD+GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDTGISFTEFTYQILQAMDFHHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 EDVQLQ+GGSDQWGNITSGLDLIRK EG +AKVFGLTIPL+LKSDGTKFGKSAGGA+W Sbjct: 181 TKEDVQLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTP+EFYQFW N+DDRDVVKYLKYFTFLT+E I+ LA KV+TEPHKREAQK LAE Sbjct: 241 LDPEKTTPFEFYQFWVNTDDRDVVKYLKYFTFLTKERIDELAVKVETEPHKREAQKVLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVHGEE L QA +ITAALFSGDI+SLTA+EIE+GFKEMPT+ S KE+KNIV+WLVD Sbjct: 301 EMTKFVHGEEALLQAVKITAALFSGDIKSLTADEIEQGFKEMPTFQSSKETKNIVEWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPS+RQAREDI GAIS+NGE+VT++GT+VT E++ NYSLVKL Sbjct: 361 LGIEPSRRQAREDINNGAISMNGEKVTDVGTDVTVENSFDGRFIIIRKGKKNYSLVKLG 419 >ref|NP_981504.1| tyrosyl-tRNA synthetase [Bacillus cereus ATCC 10987] gb|AAS44112.1| tyrosyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 419 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 372/419 (88%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR AINQQTD EGLR+L K +SLYCGVDPTGDSMHIGHLIPFM++KRFQL Sbjct: 1 MNIIDELEWRGAINQQTDEEGLRKLVEEKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGH PVILIGGATGTIGDPSGRQSER LQTLE VQ NVDALTAQMKKLF +++V+MV Sbjct: 61 AGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTH+IN+IEFLRDYGKNFSIN+MLAKD+V+SRLD+GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDTGISFTEFTYQILQAMDFHHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 EDVQLQ+GGSDQWGNITSGLDLIRK EG +AKVFGLTIPL+LKSDGTKFGKSAGGA+W Sbjct: 181 TKEDVQLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTP+EFYQFW N+DDRDVVKYLKYFTFLT+E I+ LA KV+TEPHKREAQK LAE Sbjct: 241 LDPEKTTPFEFYQFWVNTDDRDVVKYLKYFTFLTKERIDELAVKVETEPHKREAQKVLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVHGEE L QA +IT ALFSGDI+SLTA+EIE+GFKEMPT+ S KE+KNIV+WLVD Sbjct: 301 EMTKFVHGEEALLQAVKITEALFSGDIKSLTADEIEQGFKEMPTFQSSKETKNIVEWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPS+RQAREDI GAIS+NGE+VT++GT+VT E++ NYSLVKL Sbjct: 361 LGIEPSRRQAREDINNGAISMNGEKVTDVGTDVTVENSFDGRFIIIRKGKKNYSLVKLG 419 >ref|NP_834730.1| Tyrosyl-tRNA synthetase [Bacillus cereus ATCC 14579] gb|AAP11931.1| Tyrosyl-tRNA synthetase [Bacillus cereus ATCC 14579] Length = 420 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/419 (77%), Positives = 372/419 (88%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR A+NQQTD EGLR+L K +SLYCGVDPTGDSMHIGHLIPFM++KRFQL Sbjct: 1 MNIIDELEWRGAVNQQTDEEGLRKLVEEKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGH PVILIGGATGTIGDPSGRQSER LQTLE VQ NVDALTAQMKKLF +++V+MV Sbjct: 61 AGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTH+IN+IEFLRDYGKNFSIN+MLAKD+V+SRLD+GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDTGISFTEFTYQILQAMDFHHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 EDVQLQ+GGSDQWGNITSGLDLIRK EG +AKVFGLTIPL+LKSDGTKFGKSAGGA+W Sbjct: 181 TKEDVQLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTP+EFYQFW N+DDRDV+KYLKYFTFLT+E I+ LA KV+ EPHKREAQK LAE Sbjct: 241 LDPEKTTPFEFYQFWVNTDDRDVIKYLKYFTFLTKERIDELATKVEVEPHKREAQKVLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVHGEE QA++ITAALFSGDI+SLTA+EIE+GFKEMPT+ S KE+KNIV+WLVD Sbjct: 301 EMTKFVHGEEAFLQAEKITAALFSGDIKSLTADEIEQGFKEMPTFQSSKETKNIVEWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPS+RQAREDI GAIS+NGE+VT++GT+VT E++ NYSLVKL Sbjct: 361 LGIEPSRRQAREDINNGAISMNGEKVTDVGTDVTVENSFDGRFIIIRKGKKNYSLVKLG 419 >ref|NP_465123.1| tyrosyl-tRNA synthetase [Listeria monocytogenes EGD-e] pir||AF1274 tyrosyl-tRNA synthetase [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99676.1| tyrosyl-tRNA synthetase [Listeria monocytogenes] Length = 419 Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust. Identities = 267/397 (67%), Positives = 334/397 (84%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR AI QQTD EGLR+ K +SLYCG+DP+GDSMHIGHLIPFM+L+RFQ Sbjct: 1 MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSMHIGHLIPFMILRRFQN 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGHRP+IL+GGATGTIGDPSG++ ER LQ++EQ+ NV++L Q+ K+F E ++ MV Sbjct: 61 AGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGNSAASMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWT +++++FLRDYGK F++NTML+KD+V+SRL+ GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVGISFTEFAYQILQAMDFNHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 + D +LQ+GGSDQWGNIT+GLDLIRKK+G +AK FGLTIPL+ K+DGTKFGKS GGAIW Sbjct: 181 EFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGLTIPLLTKADGTKFGKSEGGAIW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 L+P+KTTPYEFYQFW N+DDRDVVKYLKYFTFLT EI+ LA++V+TEPH R AQK LA Sbjct: 241 LNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEAEIDELAKQVETEPHLRAAQKTLAA 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVH EE LEQA +I+ ALFSGD+++LTA+EIE+GFK++PT+ + N+VDWLV Sbjct: 301 EMTKFVHSEEALEQALKISKALFSGDVKALTADEIEQGFKDVPTFVAEDSEANLVDWLVT 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAED 397 LGIEPSKRQARED+ GAI +NGER +L + A D Sbjct: 361 LGIEPSKRQAREDVGNGAIYINGERQQDLEKIMDASD 397 >ref|NP_470975.1| tyrosyl-tRNA synthetase [Listeria innocua] pir||AF1637 tyrosyl-tRNA synthetase [imported] - Listeria innocua (strain Clip11262) emb|CAC96870.1| tyrosyl-tRNA synthetase [Listeria innocua] Length = 419 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 267/397 (67%), Positives = 332/397 (83%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR AI QQTD EGLR+ K +SLYCG+DP+GDSMHIGHLIPFM+L+RFQ Sbjct: 1 MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSMHIGHLIPFMILRRFQN 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGHRP+IL+GGATGTIGDPSG++ ER LQ++EQ+ NV++L Q+ K+F E D+ MV Sbjct: 61 AGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIFDFEGDSAASMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWT +++++FLRDYGK F++NTML+KD+V+SRL+ GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVGISFTEFAYQILQAMDFNHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 + D +LQ+GGSDQWGNIT+GLDLIRKK+G +AK FGLTIPL+ K+DGTKFGKS GGAIW Sbjct: 181 EFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGLTIPLLTKADGTKFGKSEGGAIW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 L+P+KTTPYEFYQFW N+DDRDVVKYLKYFTFLT EI+ LA++V+ EPH R AQK LA Sbjct: 241 LNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEAEIDELAKQVEEEPHLRAAQKTLAA 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVH EE LEQA +I+ ALFSGD+ +LTA+EIE+GFK++PT+ + N+VDWLV Sbjct: 301 EMTKFVHSEEALEQALKISKALFSGDVTALTADEIEQGFKDVPTFVAEDAEVNLVDWLVT 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAED 397 LGIEPSKRQARED+T GAI +NGER + + A D Sbjct: 361 LGIEPSKRQAREDVTNGAIYINGERQQNVEKVIDASD 397 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 581,954,130 Number of extensions: 23899821 Number of successful extensions: 74414 Number of sequences better than 1.0e-05: 775 Number of HSP's gapped: 72975 Number of HSP's successfully gapped: 777 Length of query: 419 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 291 Effective length of database: 409,704,906 Effective search space: 119224127646 Effective search space used: 119224127646 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)