BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0447.0012.p
         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00183282.1| hypothetical protein Exigu134101 [Exiguobacte...   109   2e-23
ref|ZP_00137266.1| COG0640: Predicted transcriptional regulators...   107   6e-23
ref|ZP_00087702.1| COG0640: Predicted transcriptional regulators...   104   7e-22
ref|NP_267850.1| transcription regulator [Lactococcus lactis sub...   103   2e-21
ref|ZP_00125659.1| COG0640: Predicted transcriptional regulators...   102   3e-21

>ref|ZP_00183282.1| hypothetical protein Exigu134101 [Exiguobacterium sp. 255-15]
          Length = 105

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 7   IEVFKALSNESRFQILQWLKEPNLHF---TPHEGIDMTEVG-VCVTQITNKLNMTQSTAS 62
           +++FKALSNE R  IL+WLK+P  HF     H   ++ E G VCV  I  K N++QST S
Sbjct: 5   VDLFKALSNEVRLDILRWLKDPETHFNKPAAHLSTNLAEKGGVCVGDIQEKANLSQSTVS 64

Query: 63  QYLAMMQRAGLITTKRIGKFTYYQRNEQAIRQLAAFMKDEI 103
           QYLAM+Q+ GL+ ++R GK+TYY+RNE+ I +LA ++K E+
Sbjct: 65  QYLAMLQKVGLLESERHGKWTYYRRNEEKINELAEYLKGEL 105


>ref|ZP_00137266.1| COG0640: Predicted transcriptional regulators [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 100

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 70/100 (70%)

Query: 4   MNPIEVFKALSNESRFQILQWLKEPNLHFTPHEGIDMTEVGVCVTQITNKLNMTQSTASQ 63
           M+ +E FKALSN +R +IL+ LK+P  +F P +  D+  VGVCV+ I   + ++QST S 
Sbjct: 1   MDLLETFKALSNRTRLEILKGLKDPAKNFPPQDEGDVDTVGVCVSSIQEGVGLSQSTVSD 60

Query: 64  YLAMMQRAGLITTKRIGKFTYYQRNEQAIRQLAAFMKDEI 103
           YLA++QRAGL+  +RIG++TYY+RNE  IR L   +  E+
Sbjct: 61  YLAILQRAGLVEVRRIGQWTYYKRNEANIRALVELIGAEL 100


>ref|ZP_00087702.1| COG0640: Predicted transcriptional regulators [Pseudomonas
           fluorescens PfO-1]
          Length = 100

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 68/100 (68%)

Query: 4   MNPIEVFKALSNESRFQILQWLKEPNLHFTPHEGIDMTEVGVCVTQITNKLNMTQSTASQ 63
           M+ IEVFKALSN  R +IL+ LK+P  +F P +  D+  VGVCV+ I   + ++QST S 
Sbjct: 1   MDLIEVFKALSNPVRLEILKGLKDPVKNFPPQDEGDVHTVGVCVSSIQEGIGLSQSTVSG 60

Query: 64  YLAMMQRAGLITTKRIGKFTYYQRNEQAIRQLAAFMKDEI 103
           YLA +QR GL+  +RIG++TYY+RNE  I  LA  +  E+
Sbjct: 61  YLATLQRVGLVEVRRIGQWTYYKRNEANISALAEVIGKEL 100


>ref|NP_267850.1| transcription regulator [Lactococcus lactis subsp. lactis]
 pir||F86836 transcription regulator yrfA [imported] - Lactococcus lactis subsp.
           lactis (strain IL1403)
 gb|AAK05792.1| transcription regulator [Lactococcus lactis subsp. lactis]
          Length = 100

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 64/100 (64%)

Query: 4   MNPIEVFKALSNESRFQILQWLKEPNLHFTPHEGIDMTEVGVCVTQITNKLNMTQSTASQ 63
           M  +E FK LSNE R +IL  LKEP  HF     +D  E GVCV +I   LN+TQST S 
Sbjct: 1   MENVETFKTLSNEYRLKILTLLKEPKKHFYNETKVDEVETGVCVGEIQKLLNLTQSTTSH 60

Query: 64  YLAMMQRAGLITTKRIGKFTYYQRNEQAIRQLAAFMKDEI 103
           YL+M+++  L+   RIGK+TYY+RNE+ I     F+ +E+
Sbjct: 61  YLSMLEKDNLLIATRIGKWTYYRRNEEMISDFKNFILEEL 100


>ref|ZP_00125659.1| COG0640: Predicted transcriptional regulators [Pseudomonas syringae
           pv. syringae B728a]
          Length = 102

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 1   MMNMNPIEVFKALSNESRFQILQWLKEPNLHFTPHEGIDMTEVGVCVTQITNKLNMTQST 60
           M++   +E  KA+ N++R  I++WLK P  HF P +  D   +GVCV+ I  K N++ ST
Sbjct: 1   MLSSMILEQIKAVGNDTRMLIMEWLKNPQAHFPPQDHGD-PAIGVCVSHIQAKANLSAST 59

Query: 61  ASQYLAMMQRAGLITTKRIGKFTYYQRNEQAIRQLAAFMKDEI 103
           AS +LA++QRAGL+   RIGK+TY++R+EQAI + A  +K E+
Sbjct: 60  ASAHLAILQRAGLVQATRIGKWTYFRRDEQAIDRFADRLKKEL 102


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 127,804,498
Number of extensions: 3781982
Number of successful extensions: 11245
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 11289
Number of HSP's successfully gapped: 40
Length of query: 103
Length of database: 757,237,578
Length adjustment: 70
Effective length of query: 33
Effective length of database: 567,180,648
Effective search space: 18716961384
Effective search space used: 18716961384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)