BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0447.0003.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181710.1| hypothetical protein Mther026001 [Moorella th... 92 9e-18 ref|ZP_00179902.1| hypothetical protein Mther221801 [Moorella th... 91 2e-17 gb|EAJ06754.1| unknown [environmental sequence] 88 1e-16 gb|EAK17055.1| unknown [environmental sequence] 86 4e-16 ref|NP_745652.1| hydantoin utilization protein A [Pseudomonas pu... 86 6e-16 >ref|ZP_00181710.1| hypothetical protein Mther026001 [Moorella thermoacetica ATCC 39073] Length = 239 Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 ++ +L+ ++T + + ++ ++ +E+ A + ++ ++ADMRY Sbjct: 38 LMTDLRYDLIQTTIRRTNSITPVELQAIWDSLEKEAVRYFQQENLGTTDLVFSRFADMRY 97 Query: 61 EGEVHEVTVPI---RTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLI 117 G+ H V VP+ R I E+ +FH LHE+ Y + +IE +N L Sbjct: 98 LGQEHTVKVPVPGGRLDAAAIKEIEE-----RFHALHEQHYTFRLEDSQIEFVNFHLTTF 152 Query: 118 GVRDRIQLQEGQFSEEDPGAAQISSRPVYFGQQA-DETKIYDSSLLVPGNLIVGPAIIEH 176 G + +L Q D A RPV+F + E+ IY+ SLL G I GPA++E Sbjct: 153 GRVKKPELARLQTGSADATRALKGHRPVHFDAEGWQESAIYERSLLGAGATITGPAVVEE 212 Query: 177 WGSTIVVYPGDEALIDPGGNCIIEV 201 S+ +++PG + +DP GN IIE Sbjct: 213 PASSTLLFPGQKLTVDPYGNLIIET 237 >ref|ZP_00179902.1| hypothetical protein Mther221801 [Moorella thermoacetica ATCC 39073] Length = 683 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 ++ +L+ ++T + + ++ ++ +E+ A + ++ ++ADMRY Sbjct: 482 LMTDLRYDLIQTTIRRTNSITPVELQAIWDSLEKEAVRYFQQENLGTTDLVFSRFADMRY 541 Query: 61 EGEVHEVTVPI---RTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLI 117 G+ H V VP+ R I E+ +FH LHE+ Y + +IE +N L Sbjct: 542 LGQEHTVKVPVPGGRLDAAAIKEIEE-----RFHALHEQHYTFRLEDSQIEFVNFHLTTF 596 Query: 118 GVRDRIQLQEGQFSEEDPGAAQISSRPVYFGQQA-DETKIYDSSLLVPGNLIVGPAIIEH 176 G + +L Q D A RPV+F + E+ IY+ SLL G I GPA++E Sbjct: 597 GRVKKPELARLQTGSADATRALKGHRPVHFDAEGWQESAIYERSLLGAGATITGPAVVEE 656 Query: 177 WGSTIVVYPGDEALIDPGGNCIIEV 201 S+ +++PG + +DP GN IIE Sbjct: 657 PASSTLLFPGQKLTVDPYGNLIIET 681 >gb|EAJ06754.1| unknown [environmental sequence] Length = 217 Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 12/202 (5%) Query: 8 TELRTFYGNSKELQLADINQRFEQMERSAKE----KLGESGKLNLNME---VRKYADMRY 60 ++LR Y S+ ++LAD + F+ +E + E L E K++ E + + ADMRY Sbjct: 15 SDLRYDYVRSRFVRLADAD--FDDLEATLSELEAEGLAEIEKVSTPPERVVISRAADMRY 72 Query: 61 EGEVHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVR 120 G+ H VTV + + + + +F +H+ Y + E+++LR+ + G+ Sbjct: 73 VGQEHSVTVDLSSDL--FDKQDRAGIKERFDAVHDLRYGTCAPQERSEIVSLRVTVTGML 130 Query: 121 DRIQLQEGQFSEEDPGA-AQISSRPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHWGS 179 + ++E + +E P A A R V FG Q+ +D + L+ GN I GPA+IE S Sbjct: 131 KKPDMEEIESGDESPTAEAHRGKRYVRFGDQSHAADTWDRTQLISGNRIAGPALIEEHSS 190 Query: 180 TIVVYPGDEALIDPGGNCIIEV 201 T V++PGD A +D GN ++ V Sbjct: 191 TTVIHPGDTATVDMLGNLVVSV 212 >gb|EAK17055.1| unknown [environmental sequence] Length = 684 Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 7/203 (3%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 ++++L+ E+RT + ++L ++ + E++ +K+ + S + E DM Y Sbjct: 482 IMSDLRHDEVRTLNISLEDLDCKNLAKTIEEITIESKKVIDRSKAPLIKKERIIELDMLY 541 Query: 61 EGEVHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVR 120 G+ H V+V + +K+T N+E AF E + R Y+ G I +LNLRL +IGVR Sbjct: 542 LGQTHSVSVSVSDDLKKLTTRNIEKAF---LESYARAYSRPLEGISIRVLNLRLSMIGVR 598 Query: 121 DRIQLQ---EGQFSEEDPGAAQISSRPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHW 177 I L +G+ +E+ IS + +Y E KI+D LL G++I GPA++ Sbjct: 599 PDIDLSVFSKGERAEKTSDCV-ISKQKIYSNGAWHEAKIFDRLLLPGGSIISGPALLTQP 657 Query: 178 GSTIVVYPGDEALIDPGGNCIIE 200 +TI + P A +D GN I+ Sbjct: 658 DATIFIEPKMNAKVDSYGNIILS 680 >ref|NP_745652.1| hydantoin utilization protein A [Pseudomonas putida KT2440] gb|AAN69116.1| hydantoin utilization protein A [Pseudomonas putida KT2440] Length = 694 Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Query: 16 NSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRYEGEVHEVTVPIRTRT 75 ++ + LA +NQ ++ + L E G + +MRY G++HE +V ++ + Sbjct: 507 DAGHVDLAQLNQALAELRQQGLANLREDGFGDQASSCHYTLEMRYLGQIHECSVDLQQHS 566 Query: 76 RKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVRDRIQLQEGQFSEEDP 135 + E + A +FH H+ LY++ +EL+NL +IG R E Q E P Sbjct: 567 --LDEAGLAALISRFHSRHQTLYSYSEPASPVELVNLECSVIGHLPRPPQPELQGPAEPP 624 Query: 136 GAAQISSRPVYFGQQAD--ETKIYDSSLLVPGNLIVGPAIIEHWGSTIVVYPGDEALIDP 193 S RP+ F + T +++ + L+PG + GP +IE + IV+ PG +A ++P Sbjct: 625 APTAQSVRPMLFSADGEWQPTPVFNGNHLLPGQTVHGPCVIEEDTTNIVLPPGWQARLEP 684 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 300,085,490 Number of extensions: 12094835 Number of successful extensions: 31032 Number of sequences better than 1.0e-05: 114 Number of HSP's gapped: 30937 Number of HSP's successfully gapped: 114 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)