BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0030.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_658599.1| tetR, Bacterial regulatory proteins, tetR famil... 123 3e-27 ref|NP_834276.1| Transcriptional regulator, TetR family [Bacillu... 119 2e-26 ref|NP_980994.1| transcriptional regulator, TetR family [Bacillu... 117 1e-25 ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillu... 102 6e-21 ref|NP_979438.1| transcriptional regulator, TetR family [Bacillu... 102 7e-21 >ref|NP_658599.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_847017.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP28503.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 205 Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 7/189 (3%) Query: 2 KTKKLIRDALVSLIAEKGFDSVTVNDIAGRAQINRSTFYLHYTDKYELLEKITAEITGKL 61 +T++LI+DA V+L+ EKGF++VTV IA RA +NR+TFY HY DKY+LL+K E+ KL Sbjct: 13 RTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKL 72 Query: 62 MALIIPAAHVQGGL-LGVGDLTRDLEKILAAIAEDALFYQIMLSGRGVHSFRFDLGNLLK 120 +I P + L + + IAE+A FY +ML + ++ + + ++ Sbjct: 73 TEVIKPKNRNKEDFQLAFDSPHPNFLALFEHIAENANFYNVMLGDKAAGNYTYKMMKAIQ 132 Query: 121 QKL------DEGFREQPLISKDLFVELLSSLYLGAIAWWLDNGMKYSPAFMAGQLVQLMT 174 L + E+ ++ +D+ + ++ +LG I WL GM Y+P FMA QL +L+ Sbjct: 133 THLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTPHFMAMQLTRLII 192 Query: 175 MGPVKVSGL 183 +G +GL Sbjct: 193 LGAHTAAGL 201 >ref|NP_834276.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP11477.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 205 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 7/189 (3%) Query: 2 KTKKLIRDALVSLIAEKGFDSVTVNDIAGRAQINRSTFYLHYTDKYELLEKITAEITGKL 61 +T++LI+DA V+L+ EKGF++VTV IA RA +NR+TFY HY DKY+LL+K E+ KL Sbjct: 13 RTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKL 72 Query: 62 MALIIPAAHVQGGL-LGVGDLTRDLEKILAAIAEDALFYQIMLSGRGVHSFRFDLGNLLK 120 +I P + L + IAE+ FY +ML + ++ + + ++ Sbjct: 73 TEVIKPRNRNKEDFQLTFDSPHPSFLALFEHIAENTNFYNVMLGDKAAGNYTYKMMKAIQ 132 Query: 121 QKL------DEGFREQPLISKDLFVELLSSLYLGAIAWWLDNGMKYSPAFMAGQLVQLMT 174 L + E+ ++ +D+ + ++ +LG I WL GM Y+P FMA QL +L+ Sbjct: 133 THLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKRGMIYTPHFMAMQLTRLII 192 Query: 175 MGPVKVSGL 183 +G +GL Sbjct: 193 LGAHTAAGL 201 >ref|NP_980994.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS43602.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 205 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 7/189 (3%) Query: 2 KTKKLIRDALVSLIAEKGFDSVTVNDIAGRAQINRSTFYLHYTDKYELLEKITAEITGKL 61 +T++LI+DA V+L+ EKGF++VTV IA RA +NR+TFY HY DKY+LL+K E+ KL Sbjct: 13 RTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEMLEKL 72 Query: 62 MALIIPAAHVQGGL-LGVGDLTRDLEKILAAIAEDALFYQIMLSGRGVHSFRFDLGNLLK 120 +I + L + IAE+A FY +ML + ++ + + ++ Sbjct: 73 TKVIKQKNRNKEDFQLTFDSPHPSFLALFEHIAENANFYNVMLGDKAAGNYTYKMMKAIQ 132 Query: 121 QKL------DEGFREQPLISKDLFVELLSSLYLGAIAWWLDNGMKYSPAFMAGQLVQLMT 174 L + E+ ++ +D+ + ++ +LG I WL GM Y+P FMA QL +L+ Sbjct: 133 THLTLSLSISQPNDEKLMVPRDILISYVTGAHLGMIMSWLKKGMIYTPHFMAMQLTRLII 192 Query: 175 MGPVKVSGL 183 +G +GL Sbjct: 193 LGAHTAAGL 201 >ref|NP_832829.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP10030.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 205 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 20/198 (10%) Query: 1 VKTKKLIRDALVSLIAEKGFDSVTVNDIAGRAQINRSTFYLHYTDKYELLEKITAEITGK 60 V+TK IR+ALV LI EKGFD++TV DI +A INR TFY HY DK++L+ K +I + Sbjct: 11 VRTKTAIRNALVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQEDIMYE 70 Query: 61 LMALIIPAAHVQGGLLGVGDLTRD---------LEKILAAIAEDALFYQIMLSGRGVHSF 111 ++ Q + DL + + IL + E++ F + +LS +G SF Sbjct: 71 FSSIA-----KQKFPEVIADLGSNPSPTMPFILITSILEFLNENSDFMRAVLSPKGDLSF 125 Query: 112 RFDLGNLLKQKLDEGF------REQPLISKDLFVELLSSLYLGAIAWWLDNGMKYSPAFM 165 + L + + + L E +E L+ + ++S ++G I WL+NG K +P + Sbjct: 126 QTKLKDFMWKTLFEDTNGPLINKENLLVPSEYLTSYMASAHIGVIQQWLNNGQKETPEEI 185 Query: 166 AGQLVQLMTMGPVKVSGL 183 A L + GP +GL Sbjct: 186 ARFLSTIAVHGPFYAAGL 203 >ref|NP_979438.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS42046.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 205 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 1 VKTKKLIRDALVSLIAEKGFDSVTVNDIAGRAQINRSTFYLHYTDKYELLEKITAEITGK 60 V+TK IR+A V LI EKGFD++TV DI +A INR TFY HY DK++L+ K EI K Sbjct: 11 VRTKTAIRNAFVELIEEKGFDAITVKDITTKANINRGTFYAHYQDKFDLMTKCQEEIMYK 70 Query: 61 LMALI---IPAAHVQGGLLGVGDLTR-DLEKILAAIAEDALFYQIMLSGRGVHSFRFDLG 116 ++ +P G + + IL + E++ F + +LS +G SF+ L Sbjct: 71 FSSIAKQKLPEVIADLGSSPSPTMPFIPITSILEFLNENSDFMKAVLSPKGDLSFQTKLK 130 Query: 117 NLLKQKLDEGF------REQPLISKDLFVELLSSLYLGAIAWWLDNGMKYSPAFMAGQLV 170 + + + + E +E L+ ++S ++G I WL+NG K +P +A L Sbjct: 131 DFMWKTIFEDTNGALINKENLLVPSQYLASYMASAHIGVIQQWLNNGQKETPEEIARILS 190 Query: 171 QLMTMGPVKVSGL 183 + GP +GL Sbjct: 191 TIAVHGPFYAAGL 203 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.140 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 259,902,088 Number of extensions: 10356657 Number of successful extensions: 28544 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 28516 Number of HSP's successfully gapped: 72 Length of query: 188 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 70 Effective length of database: 436,855,896 Effective search space: 30579912720 Effective search space used: 30579912720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)