BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0023.p (672 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00102859.1| COG0840: Methyl-accepting chemotaxis protein ... 358 2e-97 ref|NP_693023.1| methyl-accepting chemotaxis protein [Oceanobaci... 144 1e-32 ref|NP_693651.1| methyl-accepting chemotaxis protein [Oceanobaci... 129 2e-28 ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein ... 115 4e-24 ref|ZP_00103600.1| COG0840: Methyl-accepting chemotaxis protein ... 114 1e-23 >ref|ZP_00102859.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 531 Score = 358 bits (919), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 202/521 (38%), Positives = 294/521 (56%), Gaps = 1/521 (0%) Query: 134 QDYFQQALQGKEAVSEVLFSKESNQHVVAIARPLEHDGHITGVLIGTVVFNSLSSPVAEV 193 + ++ L G ++S+V+ S + VVA+ +P++ D + GVLIGT+ FN + ++ Sbjct: 4 ESMCKRLLLGSVSLSDVIISMVTGNTVVAVGQPIKADNQVVGVLIGTINFNQIVKHATKI 63 Query: 194 KIGDSGYGYMTDRTGLIVYHPDQGKILKETLDGNSNKELNALVQVMKSGKASDGFYTYEG 253 KIG+SGY YM DR GL+V HP Q KIL E L ++ EL LV+ MK+G+A +GFY+YEG Sbjct: 64 KIGESGYAYMVDREGLLVSHPVQEKILTENLSDTASGELKQLVERMKAGEAGEGFYSYEG 123 Query: 254 VHKYMSFQPAGNWVVATTANVQDYMAPATEIRNTTXXXXXXXXXXXXXXXXXXTTRNIVH 313 V+KY F+P +WVVA TAN +YMA A IR T NIV Sbjct: 124 VYKYTCFEPVESWVVAVTANYDEYMAAALSIRKQT-IILIFSALTIALLIAVLIANNIVK 182 Query: 314 PIIKLEQAMSRAGEGNLTVHTSIRSGDELQELSEAFNTMIDKQKAIIEKVRAGSVSLXXX 373 PI +L+ M +AG+G+LTV + I + DE++ L E+FN MI+ Q I++ VR G+ L Sbjct: 183 PIKQLQSLMEKAGQGDLTVQSEINTKDEIKTLGESFNQMINSQSTIVKHVRRGAQDLAAS 242 Query: 374 XXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXXXXXXXKAAAT 433 AE +A Sbjct: 243 SEELAASSEQVSTSSQEISASIQHVAREAEEQSHAVLDASQTLVELSSMVQLAQNRALKI 302 Query: 434 SGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIGTIXXXX 493 + +++ T QAAQ GR +V +TV+A+ I+ +Q+T LQ +++LS +V II TI Sbjct: 303 NQSSENTKQAAQEGRIKVNNTVEAIEMINIKSQDTMTVLQELNQLSTKVGEIITTINAIA 362 Query: 494 XXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVSRITQAV 553 GEHGRGF+VVA+EVR L+++++ +TEIS LV++M+ + +AV Sbjct: 363 TQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAEQSNLGSTEISTLVTEMIKQTEKAV 422 Query: 554 DSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQIIKLID 613 SM+ EAVE GV VV ETDH F II VE G++KEI+++T++EVATSDQ+I LID Sbjct: 423 QSMQQEKEAVEKGVEVVRETDHTFAQIIKVVEETVGNIKEIVELTKEEVATSDQVISLID 482 Query: 614 SMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMA 654 + +I+E NS+ V++A EEQ A+ AASA+E+SA+A Sbjct: 483 KVATITENTTANSQQVAAAAEEQTASTETVAASAEEISALA 523 >ref|NP_693023.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] dbj|BAC14058.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] Length = 665 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 139/566 (24%), Positives = 237/566 (41%), Gaps = 19/566 (3%) Query: 105 LLESLIIAGTDGQVL-LTSSPENPG-LDVRDQDYFQQAL--QGKEAVSEVLFSKESNQHV 160 + E + G+ + +S +NP D R++ ++QQA+ QG+ V+ S SNQ V Sbjct: 108 VFEQTYVGSETGEFMNFPTSFKNPSDYDPRERPWYQQAMENQGEVIVTTPYVSASSNQVV 167 Query: 161 VAIARPLEHDGHITGVLIGTVVFNSLSSPVAEVKIGDSGYGYMTDRTGLIVYHPDQGKIL 220 V +A+ ++ GV+ + SL++ V V IG+ GY ++ D + HPD + Sbjct: 168 VTLAKATANND---GVVAVNLELASLTNIVNSVAIGEEGYMFLLDEGQSYISHPDY-EAG 223 Query: 221 KETLDGNSNKELNALVQVMKSGKASDGFYTYEGVHKYMSFQPA--GNWVVATTANVQDYM 278 E ++ +K ++ ++GK S Y +EG K ++F + W +A T + Sbjct: 224 SEAVEDFFSKLYDS-----ENGKFS---YQFEGDDKQLAFATSEITGWKIAGTMFNSEIA 275 Query: 279 APATEIRNTTXXXXXXXXXXXXXXXXXXTTRNIVHPIIKLEQAMSRAGEGNLTVHTSIRS 338 + I NTT R+I PI L A G+L+ + Sbjct: 276 YNVSPILNTTIFVITVALILGGVVIVI-IIRSISKPIYHLVSASDTISHGDLSDEVHLHR 334 Query: 339 GDELQELSEAFNTMIDKQKAIIEKVRAGSVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXX 398 DEL L+++FN M + II +VR S L Sbjct: 335 DDELGTLAQSFNKMRENLNGIILQVRDKSNHLASSAEQLNASTEQNTSATEQISSSVQEV 394 Query: 399 XAGAEXXXXXXXXXXXXXXXXXXXXXXXXXKAAATSGNADVTNQAAQRGRAQVMDTVQAM 458 G + S T A G + T+ M Sbjct: 395 AEGMSSLNNNITKSSKLAKEMTDSIYTIEASSNEVSNTVTNTISAVNEGNKALNTTISQM 454 Query: 459 NTISSSTQETEEQLQAVSELSDQVSTIIGTIXXXXXXXXXXXXXXXXXXXXXGEHGRGFS 518 I +T + ++ + S+++S II I GEHG+GF+ Sbjct: 455 EFIKENTHQLSNNIEGLGNQSEEISKIIDVITDISEQTNLLALNATIEAARAGEHGKGFA 514 Query: 519 VVAEEVRKLSDETHKQATEISALVSDMVSRITQAVDSMRGATEAVEGGVRVVTETDHAFV 578 VVA+EVRKL++++ + A +I ++S + S V SM+ AT VE G+ + D +F Sbjct: 515 VVADEVRKLAEKSSQSAEQIKTMISAIQSETANTVSSMKAATTEVEKGINIANNADQSFS 574 Query: 579 HIINSVELITGSVKEILDITQDEVATSDQIIKLIDSMGSISELAAINSENVSSATEEQAA 638 +I V+ IT + + + + Q L + + SI + + +ENVS++T+EQ A Sbjct: 575 NITGYVDSITNQIMNVTTEIEGISTATKQFTSLFEGVASIGDTVSHEAENVSASTQEQLA 634 Query: 639 TVTNFAASAQEVSAMANELEILVEKF 664 ++ A SA +++ +A +L+ LVE F Sbjct: 635 SMEEIANSAADLTTVAEDLQQLVENF 660 >ref|NP_693651.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis HTE831] dbj|BAC14685.1| methyl-accepting chemotaxis protein (divided with OB2729 and OB2730) [Oceanobacillus iheyensis HTE831] Length = 540 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/547 (23%), Positives = 233/547 (42%), Gaps = 23/547 (4%) Query: 125 ENPGLDVRDQDYFQQALQGKEAV--SEVLFSKESNQHVVAIARPLEHDGHITGVLIGTVV 182 ++ D ++ ++ +++ ++ V S+ + + + VV +++ +E DG +GV+ + Sbjct: 8 QDSSYDPTERPWYVASMENQDNVIISDPYHAASTGELVVTVSKAME-DG--SGVVALDLS 64 Query: 183 FNSLSSPVAEVKIGDSGYGYMTDRTGLIVYHPDQGKILKETLDGNSNKELNALVQVMKSG 242 + + + V IG+ GY + D+ I+YHP+Q K +E+ + + K+G Sbjct: 65 IDYIQEIASGVNIGEDGYVILLDQAQNIIYHPEQEAGTK------GEEEIYSKIYENKNG 118 Query: 243 KASDGFYTYEGVHKYMSF--QPAGNWVVATTAN---VQDYMAPATEIRNTTXXXXXXXXX 297 + + YTY K + F W V T + ++D M P T Sbjct: 119 ELT---YTYHSDDKLLHFDTNELTGWKVVGTMDRGEIKDMMLPVF----WTTLGLVIGST 171 Query: 298 XXXXXXXXXTTRNIVHPIIKLEQAMSRAGEGNLTVHTSIRSGDELQELSEAFNTMIDKQK 357 R+++ PI L++ G+LT +R+ DE+ +L AFN M D K Sbjct: 172 ILGGIMILLIIRSVLKPIHALKETALIISTGDLTQTIDVRTNDEIGQLGMAFNQMQDGLK 231 Query: 358 AIIEKVRAGSVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXX 417 +I V + + + AE Sbjct: 232 ELIRDVEFNAQQVAASAEQLNANADQMTSSTEQVSTAIQEVSSSAESQLNGTEESANSLE 291 Query: 418 XXXXXXXXXXXKAAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSE 477 A A SG + N A+ G V +T++ MN I S + + + ++ E Sbjct: 292 EVSAGVEKIVDSATAVSGYVEEMNSQAEVGGQAVHNTLEQMNAIQESVSNSNQMIGSLLE 351 Query: 478 LSDQVSTIIGTIXXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATE 537 S +V+TI+ I GEHGRGF+VVA+EVRKL++++ A + Sbjct: 352 RSKEVTTILSAITDISEQTNLLALNAAIEAVRAGEHGRGFAVVADEVRKLAEQSQNSAND 411 Query: 538 ISALVSDMVSRITQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDI 597 I+ ++ + I VD M T+ V GV V + F I+ + I V+E+ I Sbjct: 412 INVILEGIQHDIQTTVDGMSTVTDKVTSGVEVSYDAIDKFGQIMQTSIKIRPQVEEVTAI 471 Query: 598 TQDEVATSDQIIKLIDSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANEL 657 +++ A Q+ + +I+ A +SE V+++TEEQ A++ +ASA+ ++ MA EL Sbjct: 472 SEEMAAAVQQVTATAIDLANIARSNAASSEEVAASTEEQLASMEEISASAKSLTDMAEEL 531 Query: 658 EILVEKF 664 + K+ Sbjct: 532 TEKIAKY 538 >ref|ZP_00097516.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 571 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 159/357 (44%), Gaps = 1/357 (0%) Query: 309 RNIVHPIIKLEQAMSRAGEGNLTVH-TSIRSGDELQELSEAFNTMIDKQKAIIEKVRAGS 367 R I +P+ +L + +GNL V + S DE+ +L+ FNTM D + +++ + S Sbjct: 213 RMIANPLAQLVGTVREIAQGNLAVRRMDLISQDEVGQLAAEFNTMTDNLRVLVKNIAYTS 272 Query: 368 VSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXXXXXX 427 + AGA Sbjct: 273 EQVAASSEELTASAEQSASATNQIAATITDVAAGATRQEAAIDDTASIVEQMSAGVQEIA 332 Query: 428 XKAAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIG 487 A S +A++T AA +G V V M I + T + ++ + E S ++ I+ Sbjct: 333 ANANTVSRSAEMTATAAGQGDKAVEAAVSQMKNIEITVAGTAQVVRQLGERSKEIGQIVD 392 Query: 488 TIXXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVS 547 I GE GRGF+VVAEEVRKL++++ + A EI+ L++++ Sbjct: 393 AISGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQEAAKEIAGLIAEIQQ 452 Query: 548 RITQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQ 607 AV++M T V+ G VV AF I+N + ++ V+EI Q + S Q Sbjct: 453 ETGSAVNAMHDGTREVKVGSEVVNSAGQAFKEIVNLIGEVSTQVREISAAIQQMASGSQQ 512 Query: 608 IIKLIDSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEKF 664 I+ I + IS A+ ++ VS+ATEEQ+A++ AAS+Q ++ MA+EL+ + KF Sbjct: 513 IVDSIRDIEHISNEASSQTQTVSAATEEQSASMEQIAASSQALAKMADELQNSIGKF 569 >ref|ZP_00103600.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 629 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 1/355 (0%) Query: 311 IVHPIIKLEQAMSRAGEGNLTV-HTSIRSGDELQELSEAFNTMIDKQKAIIEKVRAGSVS 369 I + ++ Q +GNLT+ + + DEL +L+ FN M D +++KV S Sbjct: 273 IAQRVQRIAQGAREVAQGNLTIDKIVVDTQDELGQLAGDFNQMTDNLAEVVKKVAYASEQ 332 Query: 370 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXXXXXXXK 429 + G E Sbjct: 333 VSLTAQELSSGAEESAQAAMEVAAAVTDVAQGTERQIRSVSEVSEVVKEMAAGMEQVLTN 392 Query: 430 AAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIGTI 489 +A+ T+QAA +G+ V T++ MN I + E ++ + S ++ II TI Sbjct: 393 TGYVVRSAEETSQAAAKGQGSVETTIEQMNHIQKVVNHSAELVERLGLRSQEIGQIIETI 452 Query: 490 XXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVSRI 549 GE GRGF+VVAEEVRKL++++ A +ISAL+ ++ Sbjct: 453 SGIAAQTNLLALNAAIEAARAGEQGRGFAVVAEEVRKLAEQSQGAAKQISALILEIQGDT 512 Query: 550 TQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQII 609 +AV++M+ T V G +VV E AF I ++ +TG V++I + +++II Sbjct: 513 VKAVEAMQEGTHEVGKGAKVVVEAGSAFAEIAELIQEVTGQVRDISAEIEQISQGNERII 572 Query: 610 KLIDSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEKF 664 + ++ + IS + VS++TEEQ+A+V A+S Q + MA ELE ++ KF Sbjct: 573 RAVEEVDQISREITDQTYGVSASTEEQSASVEEIASSCQVLENMAMELEKILAKF 627 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 656,574,931 Number of extensions: 21961913 Number of successful extensions: 70214 Number of sequences better than 1.0e-05: 1498 Number of HSP's gapped: 69046 Number of HSP's successfully gapped: 1582 Length of query: 672 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 540 Effective length of database: 398,844,510 Effective search space: 215376035400 Effective search space used: 215376035400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)