BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0022.p
         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00098789.1| COG1366: Anti-anti-sigma regulatory factor (a...    67   1e-10
gb|EAD41042.1| unknown [environmental sequence]                        61   8e-09
ref|NP_952479.1| anti-anti-sigma factor [Geobacter sulfurreducen...    60   1e-08
ref|ZP_00187435.1| hypothetical protein Rxyl157701 [Rubrobacter ...    57   1e-07
ref|ZP_00081469.1| COG1366: Anti-anti-sigma regulatory factor (a...    57   1e-07

>ref|ZP_00098789.1| COG1366: Anti-anti-sigma regulatory factor (antagonist of
          anti-sigma factor) [Desulfitobacterium hafniense]
          Length = 100

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query: 2  SEIVIDMPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCV 61
           E+ +++     VE+A+  RE++   I+ G S  V D     +IDS+GLGV+V+ +K+ +
Sbjct: 10 QEVFVELEGKIYVEDAAVMRERLLPLIEQGKSHCVFDTHKLNYIDSSGLGVLVAIHKRAI 69

Query: 62 ENGGTIKLKALNANVLKIFELTRLTHVFEI 91
          E GG I ++ L   V ++F+LTRL  VFEI
Sbjct: 70 ERGGGIIVQGLQGAVKELFQLTRLNKVFEI 99


>gb|EAD41042.1| unknown [environmental sequence]
          Length = 69

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 44/58 (75%)

Query: 34 SFVLDFGGCAFIDSTGLGVIVSSYKKCVENGGTIKLKALNANVLKIFELTRLTHVFEI 91
          +FV+DF   A+IDS+GLGV+VS  KK  E+GG ++L +L+ ++  +FELT+L  +F+I
Sbjct: 1  TFVIDFANTAYIDSSGLGVLVSLSKKIREHGGELRLSSLSEDLRTLFELTKLDTLFKI 58


>ref|NP_952479.1| anti-anti-sigma factor [Geobacter sulfurreducens PCA]
 gb|AAR34802.1| anti-anti-sigma factor [Geobacter sulfurreducens PCA]
          Length = 111

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 48/88 (54%)

Query: 4   IVIDMPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVEN 63
           I+    E      + + + K++     G  + ++D     FIDS+GLG +VS +K  + +
Sbjct: 13  IIFVREERLDAHNSGDLKTKMQELFTSGTKNILVDLNEVRFIDSSGLGALVSGFKNAISH 72

Query: 64  GGTIKLKALNANVLKIFELTRLTHVFEI 91
            G++KL +L   V  +FELTRL  VFEI
Sbjct: 73  QGSLKLASLQPQVKSMFELTRLHRVFEI 100


>ref|ZP_00187435.1| hypothetical protein Rxyl157701 [Rubrobacter xylanophilus DSM 9941]
          Length = 119

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 17  ASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVENGGTIKLKALNANV 76
           + E RE+  G + G  S+ V D GG  F+DS+ +G +V   +   E+GG ++L  +  +V
Sbjct: 29  SGELRERA-GELLGRSSNLVFDMGGVTFLDSSAIGALVGLMRAARESGGDVRLARVGRDV 87

Query: 77  LKIFELTRLTHVFEI 91
             IFELTRL  VF I
Sbjct: 88  RTIFELTRLDSVFGI 102


>ref|ZP_00081469.1| COG1366: Anti-anti-sigma regulatory factor (antagonist of
          anti-sigma factor) [Geobacter metallireducens]
          Length = 79

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%)

Query: 29 DGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVENGGTIKLKALNANVLKIFELTRLTHV 88
          + G  + ++D     FIDS+GLG +VS +K  + + G++KL +L   V  +FELTRL  V
Sbjct: 6  EQGKKNILVDLTDIRFIDSSGLGALVSGFKNAISHQGSLKLSSLQPQVKSMFELTRLHRV 65

Query: 89 FEI 91
          FEI
Sbjct: 66 FEI 68


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 130,781,309
Number of extensions: 4847787
Number of successful extensions: 10187
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 10198
Number of HSP's successfully gapped: 14
Length of query: 92
Length of database: 757,237,578
Length adjustment: 60
Effective length of query: 32
Effective length of database: 594,331,638
Effective search space: 19018612416
Effective search space used: 19018612416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)