BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0019.p (1046 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halo... 699 0.0 ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halo... 567 e-160 ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase... 369 e-100 ref|ZP_00065796.1| COG0784: FOG: CheY-like receiver [Microbulbif... 280 2e-73 ref|ZP_00097894.1| COG0784: FOG: CheY-like receiver [Desulfitoba... 262 4e-68 >ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halodurans] pir||E83901 hypothetical protein BH2013 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05732.1| BH2013~unknown conserved protein [Bacillus halodurans] Length = 914 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/878 (42%), Positives = 535/878 (60%), Gaps = 36/878 (4%) Query: 184 IELLVRVSNFDHPQKGGIVRSIRFGTQAAIDTERWYSIGFQLVAFIILLLHALYAGILYC 243 I L++ VS+ ++ GG+++SIRFGT+ A++ E W + QL+ I+ +H +YA IL+ Sbjct: 49 IHLMIAVSSSENIYDGGVLKSIRFGTEVAMNREHWSTSAAQLMVAAIMFIHGIYACILFF 108 Query: 244 FNRQNVXXXXXXXXVAV-GISIISDNDILLRLWLPINYTWLLKIKLLSYMWLS-YFMLQL 301 + + V + S++ ++ LL W+P+NY W +K+ LSY LS +F+L + Sbjct: 109 IRPKKIELLYFMVAVLLSAFSVLVSDERLLLQWVPLNYEWFIKLAYLSYTGLSLFFLLFV 168 Query: 302 SQSFSGRRRPHTGILFRSYAAVLGLYSAFIVVMPAEIIFQTILLFSILYLLPVAGVVWKI 361 FS +R + R + LY+ FI++ PA I + ++ + +P ++ + Sbjct: 169 RYLFSNYKRNQS---VRWISGFCALYALFILIAPATTIREWTIMLLFVLAIPFTTIILLV 225 Query: 362 VQMVLGKQEDXXXXXXXXXXXXXXXXWGVVESRGNTSNF---------FYPVDIIAAIIG 412 VQ++L K+ D W R + + FYPVD+ A + Sbjct: 226 VQVILKKERDSLFLLLAAISVASSILWSSFTGRVKSFEWGILSQIDYSFYPVDLTLAFLC 285 Query: 413 FSAYWFKRYFRNSEENIKLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEH 472 FS +WF R+FR +++ L +LQ+ KDQFLANTSHELR PLHG+I+IAQ V +E Sbjct: 286 FSTFWFIRFFRANDDKADLVTKLQKEHVKKDQFLANTSHELRNPLHGMINIAQGVVEQEG 345 Query: 473 SVMDSKSVQDMDLLLTISRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFE 532 + +S Q+++LL+T+ RRMS+LLNDL+DVT+++ K++ L ++P ++ + V+ V+++ Sbjct: 346 GRLAPESRQNLELLMTVGRRMSYLLNDLIDVTKMKQKKVTLTKQPTNLLAAVTTVVNVQR 405 Query: 533 FMTEGRALTLKNNIADSLPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEML 592 FM E + L ++ NI P V+ADE RL QILFNL+HNA+KYT EG+I + A+ + K + Sbjct: 406 FMVEAKNLRIEVNIPHDFPLVYADETRLGQILFNLVHNAIKYTEEGTIVIEAKVKKKRAV 465 Query: 593 IHVADTGAGMNEETLSRIFKRYEXXXXXXXXXXXXXXX-XSICKQLVELHHGTLTVRSQP 651 I V DTG GM+EET RIF YE SIC+ LV +H+GTL V+S P Sbjct: 466 IRVKDTGIGMDEETQKRIFHPYEQGAKEHYHENGGFGLGLSICRDLVSMHNGTLAVQSAP 525 Query: 652 GQGSEFTFTLPLA-------KGTDQPASALSSQEMPKNTEPARPSVPAHSPLADLSAIWS 704 +GS FTFTLPLA K D + +E + E A +P +P+ Sbjct: 526 SKGSIFTFTLPLASSSEREEKQRDAGQEVVRFREHKIDEEVAASHLPTSAPV-------- 577 Query: 705 AAHSGESEGAGRRIHILAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLLGTEQWDL 764 +EG R+ IL VDDD+VNL VL +I+ SE Y I E L+ L + WDL Sbjct: 578 -----RTEGLERKPKILIVDDDAVNLHVLKNIICSEAYTIEAVTSGEEVLDRLD-QGWDL 631 Query: 765 LIADVMMPHISGYELTRIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDG 824 ++ADVMMP +SGYELTR +R +FS+SELP+LLLTAR QPE++YTGF+SGANDYLVKP+D Sbjct: 632 ILADVMMPSMSGYELTREIRNQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDA 691 Query: 825 LELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSE 884 LELK R+R++ LK SI E LRMEAA+LQAQIQPHFLFNTLN+I +LSEIDT +M L E Sbjct: 692 LELKVRIRAVIELKHSIQERLRMEAAWLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLE 751 Query: 885 AFSSYLRISFDYMNSHQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPL 944 F +LR SFD N H V ++HEL L +YVYIEQ RF ERL V WD ++ + LPPL Sbjct: 752 KFGQFLRKSFDGQNIHSLVPITHELALTESYVYIEQERFGERLKVHWDKDEHVVCNLPPL 811 Query: 945 TLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKV 1004 ++QPLVENA++H IRI+ + D+G GM + ++++L Sbjct: 812 SIQPLVENALKHGVLKKPEGGNVHIRIKKQEETVKIMITDDGVGMDKATLNNVLTRKPDQ 871 Query: 1005 SGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFTIP 1042 GIG+LNT+ RL QL+G+GL ++S+P +GTS+SF +P Sbjct: 872 VSGIGMLNTDLRLKQLFGKGLFVESQPGKGTSISFYVP 909 >ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halodurans] pir||C83843 hypothetical protein BH1547 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05266.1| BH1547~unknown conserved protein [Bacillus halodurans] Length = 661 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/657 (45%), Positives = 416/657 (63%), Gaps = 23/657 (3%) Query: 388 WGVVESRGNTSNFFYPVDIIAAIIGFSAYWFKRYFRNSEENIKLNRQLQENDRLKDQFLA 447 WG G FYP D+I + F+A WF+RYF + KL QL+ ++ KD FLA Sbjct: 16 WGFFVVTG-IKVLFYPFDLIISTTCFAAVWFRRYFTIQRKTDKLVDQLKRANKTKDDFLA 74 Query: 448 NTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDLLLTISRRMSHLLNDLLDVTRLQ 507 NTSHELR PLH I+++++ + +E ++ KSV D+ ++L++ RRMS +LNDLLD L+ Sbjct: 75 NTSHELRNPLHSILNLSEGILEREKRSLNEKSVADLKIVLSVGRRMSFMLNDLLDAMSLK 134 Query: 508 DKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNNIADSLPPVFADEKRLVQILFNL 567 + L + LSI ++ +GV++MF FM EG+ + L N I +++P V ADE R++QILFNL Sbjct: 135 ENTPRLMLQHLSIHTIANGVLEMFRFMVEGKPIRLNNQIPENIPNVLADESRVIQILFNL 194 Query: 568 LHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEETLSRIFKRYEXXXXXXXXXXXX 627 +HNAVK+T EG I++ A + + I + DTG GM+++ L R+F YE Sbjct: 195 VHNAVKFTREGEISLEAYVKDDRVYIAIRDTGIGMDKDALKRVFDPYEQVRSEETMVEGG 254 Query: 628 XXX-XSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLAK--GTDQPASALSSQEMPKNTE 684 SI ++LVELH G LTVRS PGQGS FTF+L ++K G L + Sbjct: 255 FGLGLSISQKLVELHGGILTVRSTPGQGSVFTFSLQISKQTGLADDNHLLVQSDRENELA 314 Query: 685 PARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHILAVDDDSVNLKVLASILSSENYNI 744 A S P SP+A R IL VDD+ VNLKV+ASIL++E Y + Sbjct: 315 AATLSKPTISPVA------------------YRPRILVVDDEPVNLKVIASILANEAYEV 356 Query: 745 RTALGAHEALNLLGTEQWDLLIADVMMPHISGYELTRIVRERFSLSELPILLLTARTQPE 804 +T + EA+ +L T++WDL++ADVMMP +SGYELT+ +R+RF+L+ELPILL+TAR++PE Sbjct: 357 KTVISGEEAIAVLDTKEWDLVVADVMMPKMSGYELTKNIRQRFTLTELPILLITARSRPE 416 Query: 805 DIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNT 864 DI GF +GANDYL KPV+ LEL+ R+++LT KQSI + LRME A+LQAQIQPHFLFNT Sbjct: 417 DIENGFRAGANDYLTKPVNLLELRARIKALTEAKQSIRDQLRMEGAWLQAQIQPHFLFNT 476 Query: 865 LNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSHQRVALSHELELVRAYVYIEQARFE 924 LN+I+ALSEID +M+ L E F+ +L+ F + N + + EL V++Y+YIE+ RF Sbjct: 477 LNAILALSEIDIKRMQKLLEVFADFLKNKFTFTNLDELAPIEIELSTVQSYLYIEKERFA 536 Query: 925 ERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRD 984 +RL V W++ED +P T+QPLVENAV+H TI+I++ + V D Sbjct: 537 QRLNVRWEVEDCKALMIPLFTIQPLVENAVKH-GLNRSSGGEITIKIKNEDTYVKVTVTD 595 Query: 985 NGKGMTQEQVSHLLDHSRKVSGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFTI 1041 NG GM + V HLL GIGL NT+ RL + YG+GL I+S+ GTSVSF + Sbjct: 596 NGVGMDENIVQHLLTERPSARSGIGLRNTDMRLKRHYGKGLHIESKLGVGTSVSFLV 652 >ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase [Desulfitobacterium hafniense] Length = 561 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/518 (40%), Positives = 306/518 (59%), Gaps = 19/518 (3%) Query: 422 FRNSEENI-KLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSV 480 + NS + I KL+ +L D+LKD FLA TSHEL+TPL+GII+I+Q++ + Sbjct: 5 YENSFKTIEKLSDRLVVLDKLKDDFLAKTSHELKTPLNGIINISQSLLDGAGGSLSRAQA 64 Query: 481 QDMDLLLTISRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRAL 540 +D+ L+ +I +R+S L+ D+LD ++L+ I+L L + + +D+F ++ +GR + Sbjct: 65 EDIRLITSIGKRLSTLVYDILDYSKLKVMDIQLHIVCLDVHQVAESTVDIFRYLIKGRPI 124 Query: 541 TLKNNIADSLPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGA 600 TL+N I + ++ADE RL QI NLL N++KYT GSI++S G + I V+DTG Sbjct: 125 TLENKIPPNQHLIWADENRLKQIFSNLLDNSLKYTELGSISLSCRQDGGFLWIQVSDTGI 184 Query: 601 GMNEETLSRIFKRYEXXXXXXXXXXXXXXXXSICKQLVELHHGTLTVRSQPGQGSEFTFT 660 G+ + L IF YE +I +QL+ELH G + RS+PGQG+ FTF+ Sbjct: 185 GIPADKLKDIFAPYEQLGEQSANQRGIGLGLTITQQLIELHGGQIVARSEPGQGTSFTFS 244 Query: 661 LPLAKGTDQPASALSSQEMPKNTEPARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHI 720 +PLAK + +P R S+P D S + ++ G I Sbjct: 245 IPLAK----------------DNKPQR-SLPGDYVGYDGSESLATEALPQTVHVGGEFSI 287 Query: 721 LAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLL-GTEQWDLLIADVMMPHISGYEL 779 L VDD+ NLK L +IL+ YN+ A+ AL+LL G +DL I DVMMP ISGYE+ Sbjct: 288 LVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGYEV 347 Query: 780 TRIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQ 839 R +RE +S ELPILLLTA+ PED+ GF +GAND++ KP + ELK RV +L LK Sbjct: 348 CRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQLKN 407 Query: 840 SIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNS 899 S+D +L+ E A+LQAQI+PHFLFN LN+I + + K +L +LR SFD+ ++ Sbjct: 408 SMDLLLKKETAFLQAQIRPHFLFNALNTIYSFCYTNPGKAGELLAELGVFLRSSFDFSST 467 Query: 900 HQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGI 937 V + EL LV+AYV IE+ARF +L VE+ +E + Sbjct: 468 ASLVTVEKELRLVKAYVAIEEARFGSQLEVEYAVEPSV 505 >ref|ZP_00065796.1| COG0784: FOG: CheY-like receiver [Microbulbifer degradans 2-40] Length = 1535 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 247/411 (60%), Gaps = 9/411 (2%) Query: 426 EENIKLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDL 485 E+ + R+L++ D+LKD+FLANTSHELRTPL+GI+ +A+++ + K+ Q++ + Sbjct: 865 EQERSVVRRLKQLDKLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSHKTKQNLAM 924 Query: 486 LLTISRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNN 545 +++ +R++ L++DLLD +L+ + + L ++ + I LV V+ + + + + L NN Sbjct: 925 IVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAKPIELVNN 984 Query: 546 IADSLPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEE 605 ++ LP V ADE RL+QIL NL+ NAVK+T EGS+ +SAE QG+E+ I VADTG G+ E Sbjct: 985 VSKQLPKVAADESRLLQILHNLVGNAVKFTDEGSVTISAEVQGEEICISVADTGIGVPEN 1044 Query: 606 TLSRIFKRY-EXXXXXXXXXXXXXXXXSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLA 664 IF + + S+ KQLVELH GT+ VRS G+G+ F F LPL Sbjct: 1045 RFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRSTLGKGATFYFYLPLN 1104 Query: 665 KGTDQPASALSSQEMPKNTE-PARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHILAV 723 + A QE N+ A+PS P L + I + A S R HIL V Sbjct: 1105 AAIEDEADG---QEPETNSAYHAQPSCPEEE-LNEPVEIRAQAES--KSDTARTYHILIV 1158 Query: 724 DDDSVNLKVLASILSSENYNIRTALGAHEALNLL-GTEQWDLLIADVMMPHISGYELTRI 782 DD+ VN KVLA+ LS + Y + EA+ + + DL++ D+MMP +SGYE + Sbjct: 1159 DDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGYEACKQ 1218 Query: 783 VRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDGLELKYRVRS 833 +R+++S +ELPI+LLTAR+Q D+ TGF SGAND++ KP+ EL RV + Sbjct: 1219 LRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHT 1269 >ref|ZP_00097894.1| COG0784: FOG: CheY-like receiver [Desulfitobacterium hafniense] Length = 377 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 157/394 (39%), Positives = 219/394 (55%), Gaps = 27/394 (6%) Query: 653 QGSEFTFTLPLA--KGTDQPASALSSQEMPKNTEPARPSVPAHSPLADLSAIWSAAHSGE 710 +G+ FTLPLA PAS ++ P + R +P Sbjct: 2 RGTRIAFTLPLAAKDSCSAPASVRPPEKYPMDEPWGRTELP------------------- 42 Query: 711 SEGAGRRIHILAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLLGTE-QWDLLIADV 769 +G + +LAVDDDS NL+VLA + ++E YN+ A EAL LL + DL++ DV Sbjct: 43 -QGGTGKFTLLAVDDDSANLQVLARLFANEPYNVLWATNGLEALELLKSRSDIDLVLLDV 101 Query: 770 MMPHISGYELTRIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDGLELKY 829 MMP +SGYE+ R +R +FSL ELP++LLT R P DI GF +GAND+++KP D LE++ Sbjct: 102 MMPRMSGYEVCREIRRQFSLFELPVILLTVRHSPGDIAAGFKAGANDFMIKPFDALEVRA 161 Query: 830 RVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSY 889 R +L LKQS+ L+ E +LQ+QI+PHFLFN LN+I+ L D + L S Y Sbjct: 162 RTETLLQLKQSVAAALKAEMDFLQSQIKPHFLFNALNAIITLCGTDGLRAEQLITHLSYY 221 Query: 890 LRISFDYMNSHQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDG-INTALPPLTLQP 948 LR F+ + + L EL LV AYV IE+ARFE+RL V ++++ G + + PLT+QP Sbjct: 222 LRRCFE-PRTDSFLLLQDELRLVEAYVEIEKARFEDRLTVLYEVDPGALLKRILPLTIQP 280 Query: 949 LVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLL--DHSRKVSG 1006 LVENA+RH + I+ +G EV DNG G+ +EQ+ +L D+S Sbjct: 281 LVENAIRHGVMKREEGGTIRLTIQLAGDRVHVEVWDNGVGIREEQLKNLWLSDNSSSERR 340 Query: 1007 GIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFT 1040 G+GL N RRL G L + S + T V F Sbjct: 341 GVGLANIQRRLKHFCGEELHVTSREGEWTKVQFC 374 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,407,809,601 Number of extensions: 57068269 Number of successful extensions: 190566 Number of sequences better than 1.0e-05: 7134 Number of HSP's gapped: 182407 Number of HSP's successfully gapped: 7528 Length of query: 1046 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 910 Effective length of database: 387,984,114 Effective search space: 353065543740 Effective search space used: 353065543740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)