BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0018.p (147 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_350270.1| Uncharacterized conserved protein, phnB family ... 167 5e-41 ref|NP_348152.1| Uncharacterized protein, homolog of PHNB E.coli... 136 1e-31 ref|NP_981073.1| conserved hypothetical protein [Bacillus cereus... 132 4e-30 ref|NP_834350.1| PhnB protein [Bacillus cereus ATCC 14579] >gi|2... 130 7e-30 ref|NP_658676.1| hypothetical protein predicted by GeneMark [Bac... 130 9e-30 >ref|NP_350270.1| Uncharacterized conserved protein, phnB family [Clostridium acetobutylicum] pir||G97352 uncharacterized conserved protein, phnB family CAC3689 [imported] - Clostridium acetobutylicum gb|AAK81610.1| Uncharacterized conserved protein, phnB family [Clostridium acetobutylicum] Length = 137 Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/136 (56%), Positives = 100/136 (73%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 +AI Y NF+GN REAVEFYAEVF T+ P+IM +G+ PP EE K+LV++A L + Sbjct: 1 MAIQAYINFDGNCREAVEFYAEVFETKKPKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 GS +MFSD+ PGM V GNN++L + +D ++K FN+LKE G V+MELQETFWSKCY Sbjct: 61 KGSTIMFSDIVPGMKLVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETFWSKCY 120 Query: 124 GSLKDKFGIIWQLSHD 139 G + DKFGI WQLS++ Sbjct: 121 GYVVDKFGIEWQLSYE 136 >ref|NP_348152.1| Uncharacterized protein, homolog of PHNB E.coli [Clostridium acetobutylicum] pir||A97088 uncharacterized protein, homolog of PHNB E.coli [imported] - Clostridium acetobutylicum gb|AAK79492.1| Uncharacterized protein, homolog of PHNB E.coli [Clostridium acetobutylicum] Length = 137 Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 92/134 (68%) Query: 6 INVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFIDG 65 + VY +FNGN R+A+EFY+ VF + + +T+ E P P + ++ + L+ ++ + + G Sbjct: 3 LQVYISFNGNCRKALEFYSRVFEAKINKTVTYKELPSHPKVAIEKDVEELIAYSSIILKG 62 Query: 66 SPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCYGS 125 + + DVFPGMP GNNV+LT+ ++ + +++ FNKLKE GNV MELQ+T+WS+CYGS Sbjct: 63 NYLNMVDVFPGMPLTRGNNVSLTIVSNKSNELEVLFNKLKEDGNVNMELQKTYWSRCYGS 122 Query: 126 LKDKFGIIWQLSHD 139 L DKFGI W + + Sbjct: 123 LTDKFGIEWHFNCE 136 >ref|NP_981073.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43681.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 143 Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 61/134 (45%), Positives = 86/134 (64%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 + IN Y +G+ +EAV+FY E + + TFG+ P +P +P+P EAK V+HA L + Sbjct: 3 LGINPYLVLDGSGQEAVQFYKEALDAKVEVMQTFGDMPENPEYPVPAEAKERVLHATLKV 62 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 + +M SD FPG + G+ V + + +A K K+ FNKL+EGG VIM LQETFWS Y Sbjct: 63 GNTDLMISDTFPGKGHAIGSQVTIAIQISNAEKAKEVFNKLQEGGEVIMPLQETFWSPAY 122 Query: 124 GSLKDKFGIIWQLS 137 G +KDKF I WQ++ Sbjct: 123 GQVKDKFNIEWQIT 136 >ref|NP_834350.1| PhnB protein [Bacillus cereus ATCC 14579] gb|AAP11551.1| PhnB protein [Bacillus cereus ATCC 14579] Length = 143 Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 86/134 (64%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 + IN Y +G+ +EAV+FY E + + TFG+ P +P +P+P EAK V+HA L + Sbjct: 3 LGINPYLVLDGSGQEAVQFYKEALDAKVEVMQTFGDMPENPEYPIPAEAKERVLHATLKV 62 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 + +M SD FPG + G+ V + + +A K K+ F+KL+EGG VIM LQETFWS Y Sbjct: 63 GNTDLMISDTFPGQGHAIGSQVTIAIQISNAEKAKEVFDKLQEGGEVIMPLQETFWSPAY 122 Query: 124 GSLKDKFGIIWQLS 137 G +KDKF I WQ++ Sbjct: 123 GQVKDKFNIEWQVT 136 >ref|NP_658676.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847095.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28581.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 143 Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 86/134 (64%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 + IN Y +G+ +EAV+FY E + + TFG+ P +P +P+P EAK V+HA L + Sbjct: 3 LGINPYLVLDGSGQEAVQFYKEALDAKVEVMQTFGDMPENPEYPVPAEAKERVLHATLKV 62 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 + +M SD FPG + G+ V + + +A K K+ F+KL+EGG VIM LQETFWS Y Sbjct: 63 GNTDLMISDTFPGQGHAIGSQVTIAIQISNAEKAKEVFDKLQEGGEVIMPLQETFWSPAY 122 Query: 124 GSLKDKFGIIWQLS 137 G +KDKF I WQ++ Sbjct: 123 GQVKDKFNIEWQVT 136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 259,521,402 Number of extensions: 11374300 Number of successful extensions: 25071 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 25020 Number of HSP's successfully gapped: 72 Length of query: 147 Length of database: 757,237,578 Length adjustment: 107 Effective length of query: 40 Effective length of database: 466,721,985 Effective search space: 18668879400 Effective search space used: 18668879400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)