BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0015.p (601 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ91304.1| methyl-accepting chemotaxis protein histidine kin... 150 7e-35 ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus ihe... 150 7e-35 ref|NP_782429.1| two-component sensor kinase yesM [Clostridium t... 147 5e-34 ref|NP_815880.1| sensor histidine kinase [Enterococcus faecalis ... 144 6e-33 ref|NP_244708.1| two-component sensor histidine kinase [Bacillus... 143 2e-32 >gb|AAQ91304.1| methyl-accepting chemotaxis protein histidine kinase [Paenibacillus sp. Dex70-34] Length = 574 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/402 (26%), Positives = 201/402 (50%), Gaps = 19/402 (4%) Query: 186 FDLYEDLKGVLLISMSNDQYQRQIENIQLGNRGSISLLTDDG--MTIATTSRLEPKEDTG 243 F+ E++ G +L++++ + +IE ++LG G ++ +G M A T+R+ + D Sbjct: 179 FETMENI-GYVLVNLNGRKIIDKIEQMKLGQTGRFFVVDQEGRIMIDADTTRINKRVDNA 237 Query: 244 RVQNILKHWKELDRPN-QFAVGS-SIVSVKQTSTYDNWIVVSEIPSKELTASAEIIRRTV 301 ++L++ D +F G VKQ + + W++V +P E+T + + R + Sbjct: 238 ---DLLRNITANDFVEFEFMNGDVRYYGVKQRLS-NGWLIVGTVPVHEITDKLDSLHRNI 293 Query: 302 AYFLGILVFLGALCVVGFGYQLYRPLQAVKRQVDAIKKGHFDARVTHFANNEIGDLGRML 361 G L + ++ RP++ + RQ+ ++G R+ + +E G + R Sbjct: 294 LGSFAAFTLAGILIGLVIANRITRPIKQLTRQMKMAQQGDLSVRINVLSKDEFGLMSRQF 353 Query: 362 NTMAVRIQDLLADLHDSEELKHKLEIRALQSQINPHFMYNTLNTIRMFAMMKDYEKINTL 421 N M I+ L+ + ++ K EIRA+ +INPHF++NTL+ +R K Sbjct: 354 NRMMADIERLMDQVKLEQKQKRDAEIRAVTHRINPHFLFNTLSNLRWLIKYNQSAKAYEG 413 Query: 422 MGRLVALLRYSMENYEQTVQLQQELDYLADYVGLLNMRYKCQVHLEAEIEEPLRGMQIPK 481 + L+ LL +M + +++ELD + Y+ +L +RY L ++ IP+ Sbjct: 414 ISALIRLLEANMGKKGNFITVEEELDIVEKYLAILELRYNRTFRLHTNVDPAAAEFVIPR 473 Query: 482 LSLQPLIENSVFHGILPNKT-AEGHIKVHVFTDSLQNHIVIEVSDDGVGL---EEAALGT 537 + +QPL+ENSVFHGI+P +T E HI + D+L +I V D+G+G+ + + Sbjct: 474 MLIQPLVENSVFHGIVPKETDGEIHIDAAMQEDAL----IITVRDNGIGILPDKRVVEVS 529 Query: 538 LQLHLLREESTENIGLQNVWMRMKLLFGKAAQILLLSPPGEG 579 ++ +L +S IGL++V+ + L +G+ + L SP G Sbjct: 530 IKDAVLSGQS--GIGLRHVYECINLYYGRGSDATLSSPGERG 569 >ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus iheyensis HTE831] dbj|BAC12733.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 577 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 12/324 (3%) Query: 265 SSIVSVKQTSTYDNWIVVSEIPSKELTASAEIIRRTVAYFLGILVFLGALCVVGFGYQLY 324 S +V VK T NW V+ I +L +R + + +GIL G L F + Sbjct: 255 SHLVVVKNQLTNTNWFSVTAIDEDKLAEDLTEVRALIGFLIGILFLAGLLFFTFFYHSNI 314 Query: 325 RPLQAVKRQVDAIKKGHFDARVTHFANNEIGDLGRMLNTMAVRIQDLLADLHDSEELKHK 384 + + + +Q ++ G+ A V +N+EIG LG N M IQ + + + + + Sbjct: 315 KRILELTKQTKQVETGNLTASVHVDSNDEIGKLGYRFNKMVKTIQKHIDTEYRLKIKQKE 374 Query: 385 LEIRALQSQINPHFMYNTLNTIRMFAMMKDYEKINTLMGRLVALLRYSMENYEQTVQLQQ 444 E++ LQ+QINPHF+YNTL+ IR A +++ + + L+ RL + R ++ N + V+ ++ Sbjct: 375 SELKVLQNQINPHFLYNTLDMIRWNARLENAPETSQLIERLSKIFRMNLNNGKSLVKFEE 434 Query: 445 ELDYLADYVGLLNMRYKCQVHLEAEIEEPLRGMQIPKLSLQPLIENSVFHGILPNKTAEG 504 E++Y Y+ L R ++ + +EE L+G + K +QPLIENS+ HG N +G Sbjct: 435 EVEYSQAYLELQKKRLGEKLDYQLVMEEQLKGYYVMKQMIQPLIENSIQHG-FKNLPRQG 493 Query: 505 HIKVHVFTDSLQNHIVIEVSDDGVGLEEAALGTLQLHLLREESTENIGLQNVWMRMKLLF 564 I++H + D +N VI+V D+G G E H E L+N+ R+ ++F Sbjct: 494 IIRIHCYRD--ENQAVIDVIDNGWGFNE--------HKKNGELRAGYALKNLNDRISIVF 543 Query: 565 GKAAQILLLSPPGEGMTIRITLPI 588 GK + +L EG +R+ LP+ Sbjct: 544 GKLYGLTILDSD-EGAFLRMILPL 566 >ref|NP_782429.1| two-component sensor kinase yesM [Clostridium tetani E88] gb|AAO36366.1| two-component sensor kinase yesM [Clostridium tetani E88] Length = 577 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 180/342 (52%), Gaps = 21/342 (6%) Query: 264 GSSIVSVKQTSTYDNWIVVSEIPSKE-----LTASAEIIRRTVAYFLGILVFLG------ 312 S V++K D+ + S +P E + + I + + +++F+G Sbjct: 235 SSGTVALKNVHNKDSTVFFSSVPYTENWILCIIVENKKIHTQINQIINLILFVGLILLLA 294 Query: 313 ----ALCVVGFGYQLYRPLQAVKRQVDAIKKGHFDARVTHFANNEIGDLGRMLNTMAVRI 368 ++ + G + +P+ +K + I KG+FD+ N+EI LG++ N M I Sbjct: 295 AILLSIVISG---SIVKPIHRLKSNMLEISKGNFDSYYEIKNNDEISILGQVFNQMLTDI 351 Query: 369 QDLLADLHDSEELKHKLEIRALQSQINPHFMYNTLNTIRMFAMMKDYEKINTLMGRLVAL 428 + L+ ++ E+ K E+R LQSQINPHF+YNTL+TI+ A+ + ++ ++ L Sbjct: 352 KRLINKVYQVEKQKRSAELRVLQSQINPHFLYNTLDTIQWKALEYNAFEVVDMINYLSNF 411 Query: 429 LRYSMENYEQTVQLQQELDYLADYVGLLNMRYKCQVHLEAEIEEPLRGMQIPKLSLQPLI 488 R S+ + ++ + + E+ ++++Y+ + +RYK ++ +++ L IPKL +QPL+ Sbjct: 412 FRISLSDGKEFITISDEVAHVSNYLEIQKIRYKDKISYSMDVDSSLDQYLIPKLIVQPLV 471 Query: 489 ENSVFHGILPNKTAEGHIKVHVFTDSLQNHIVIEVSDDGVGLEEAALGTLQLHLLREEST 548 ENS++HG+ K +G I V + S + I+V D+G+G++ L TL+ +L T Sbjct: 472 ENSIYHGLKLQK-HKGIINVSI--SSKDGFLFIKVIDNGLGMDVEQLRTLRKNLWESIET 528 Query: 549 ENIGLQNVWMRMKLLFGKAAQILLLSPPGEGMTIRITLPIES 590 + GL N+ R+KL FGK I + S G + + +P+ S Sbjct: 529 NHYGLYNINERLKLAFGKKYSIEIKSELKIGTQVLLRIPLIS 570 >ref|NP_815880.1| sensor histidine kinase [Enterococcus faecalis V583] gb|AAO81950.1| sensor histidine kinase [Enterococcus faecalis V583] Length = 570 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 7/254 (2%) Query: 336 AIKKGHFDARV-THFANNEIGDLGRMLNTMAVRIQDLLADLHDSEELKHKLEIRALQSQI 394 AI G+ R+ T+ E+ D+ +N M + + D++ E + +RALQSQI Sbjct: 319 AIGDGNLKERIDTNQVQEELNDIASAINFMVDSLDQYIHDIYTLEIKQRDAHMRALQSQI 378 Query: 395 NPHFMYNTLNTIRMFAMMKDYEKINTLMGRLVALLRYSMENYEQTVQLQQELDYLADYVG 454 NPHF+YNTL IRM+A+ + E++ ++ LLR ++ N E+T L +E+ + YV Sbjct: 379 NPHFLYNTLEYIRMYALSRQQEELADVVYAFSTLLRNNI-NQEKTTTLAEEISFCEKYVY 437 Query: 455 LLNMRYKCQVHLEAEIEEPLRGMQIPKLSLQPLIENSVFHGILPNKTAEGHIKVHVFTDS 514 L MRY Q + EIEE + ++IPK +QPL+EN HGI + + IKVH + + Sbjct: 438 LYQMRYPDQFAYKFEIEETIADVEIPKFIIQPLVENYFVHGI-DYQRQDNAIKVHAYREG 496 Query: 515 LQNHIVIEVSDDGVGLEEAALGTLQLHLLREE--STENIGLQNVWMRMKLLFGKAAQILL 572 I++ V D+G G+ L ++ L + E + ++IGL+NV R++ FG++ + + Sbjct: 497 --EKIIVAVVDNGKGITANRLEEIRERLNQTEIDTEQSIGLRNVHERLQRFFGESYGLTI 554 Query: 573 LSPPGEGMTIRITL 586 GEG TIR++ Sbjct: 555 EGKEGEGTTIRLSF 568 >ref|NP_244708.1| two-component sensor histidine kinase [Bacillus halodurans] pir||A84130 two-component sensor histidine kinase BH3841 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07560.1| two-component sensor histidine kinase [Bacillus halodurans] Length = 481 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/399 (26%), Positives = 189/399 (47%), Gaps = 20/399 (5%) Query: 206 QRQIENIQLGNRGSISLLTDDGMTIATTSRLEPKEDTGRVQNILKHWKELDRPNQFAVGS 265 Q+QIE + R ++ L D M + + E + Q I + LD Q A Sbjct: 87 QQQIEKLIRNERNAVHLKNYDHMVTSFLEKTEQAAEGFDEQRIDAYPFYLDESQQIA--Q 144 Query: 266 SIVSVKQTSTYDNWIVVSEIPSKELTASAEIIRRTVAYFLGILVFLGALCVVGFGYQLYR 325 I + T D + + L + + ++ F+ ILV L + + + + Sbjct: 145 YIREMTLTLIDDELTNYQQFYNSMLQKHSYTTQLAISIFVSILV-LSSFFAIWLSDGITK 203 Query: 326 PLQAVKRQVDAIKKGHFDAR-VTHFANNEIGDLGRMLNTMAVRIQDLLADLHDSEELKH- 383 P+ + I G D + V +N+E+ L N M I L+ ++ ++ L Sbjct: 204 PISRLTNAAYEISSGQLDGKDVKVSSNDELAFLTETFNDMRQNISGLVKEMEETSRLNQL 263 Query: 384 --KLEIRALQSQINPHFMYNTLNTIRMFAMMKDYEKINTLMGRLVALLRYSMENYEQTVQ 441 ++E+R+LQSQINPHF++NTLN I + ++ EK L+ + +LLRY++ + ++T Sbjct: 264 LKEMELRSLQSQINPHFLFNTLNVILKMSYIEQAEKTGKLIASVSSLLRYNLGSLDRTTT 323 Query: 442 LQQELDYLADYVGLLNMRYKCQVHLEAEIEEPLRGMQIPKLSLQPLIENSVFHGILPNKT 501 + E + L +Y +L R+ + L +++ R IP L+LQPL+EN+ HG+ + Sbjct: 324 VADEANMLQEYFHILKARFGDWISLSLNVDDEARPYLIPCLTLQPLVENAFIHGV---EQ 380 Query: 502 AEGHIKVHVFTDSLQNHIVIEVSDDGVGLEEAALGTLQLHLLREESTEN---------IG 552 E + V + + + I +SD+G G++EA L L E+ TE IG Sbjct: 381 MESGAAIDVTIQKVGDSLTISISDNGAGMDEATRKEL-LSSKEEDQTEKRASGGHSTGIG 439 Query: 553 LQNVWMRMKLLFGKAAQILLLSPPGEGMTIRITLPIESV 591 ++NV R+++ + K + + S GEG T+ + LP + V Sbjct: 440 MRNVMRRLEIFYQKTELLTIESSLGEGTTVSLLLPTKEV 478 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 750,995,832 Number of extensions: 29591621 Number of successful extensions: 90021 Number of sequences better than 1.0e-05: 198 Number of HSP's gapped: 89769 Number of HSP's successfully gapped: 198 Length of query: 601 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 470 Effective length of database: 401,559,609 Effective search space: 188733016230 Effective search space used: 188733016230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)