BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0005.p
         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum ...    64   1e-09
ref|ZP_00024383.1| COG3706: Response regulator containing a CheY...    60   1e-08
ref|NP_936873.1| putative regulatory components of sensory trans...    60   1e-08
ref|NP_792400.1| GGDEF domain protein [Pseudomonas syringae pv. ...    60   1e-08
ref|NP_762292.1| Response regulator [Vibrio vulnificus CMCP6] >g...    60   1e-08

>ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum]
          Length = 594

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVA-----AVYVD 63
           GEEFG+++ G T   ++  AE +R ++A+L + H  S   G +T+SIGV+     A   D
Sbjct: 503 GEEFGVILPGCTLTDAQTLAEKMRLAVAELHLPHLASQTSGEVTISIGVSCLNLVATQGD 562

Query: 64  NVREEDIYKLGDDALYQSKAQGRNCVT 90
           ++  + +    D ALY++K  GRNCV+
Sbjct: 563 SLDTQSLIAEADTALYRAKTSGRNCVS 589


>ref|ZP_00024383.1| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Ralstonia metallidurans]
          Length = 350

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEEF +++   +P  +R  AE +RR+I  LRI HA S   G +TVSIG A +      + 
Sbjct: 266 GEEFSMILPATSPGGARLLAEKVRRAIETLRIPHACSPTGGFVTVSIGGAVIVPGG--DA 323

Query: 69  DIYKL---GDDALYQSKAQGRNCVTM 91
           D  +L    D  LYQ+K  GRN V M
Sbjct: 324 DFSRLIEAADAGLYQAKRNGRNQVVM 349


>ref|NP_936873.1| putative regulatory components of sensory transduction system
           [Vibrio vulnificus YJ016]
 dbj|BAC96843.1| putative regulatory components of sensory transduction system
           [Vibrio vulnificus YJ016]
          Length = 319

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEEF +++ G    Q+ + AE I +++ADL   HA S    ++T+S GV   ++ N REE
Sbjct: 232 GEEFVVLLGGSDAEQAVKAAERIHKAVADLSYPHAFSAVSDVVTLSQGV-YTFIPNGREE 290

Query: 69  --DIYKLGDDALYQSKAQGRNCVTMFQ 93
              IY+  D ALYQ+K +G+N    F+
Sbjct: 291 LQTIYQFADKALYQAKLEGKNRYVTFR 317


>ref|NP_792400.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gb|AAO56095.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 528

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDN--VR 66
           GEE  +V+ G     +R+ AE+I ++I D +I H  S  +GI+TVS+GVA V   N  + 
Sbjct: 414 GEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASP-FGIVTVSLGVATVVGSNRQIS 472

Query: 67  EEDIYKLGDDALYQSKAQGRNCVTM 91
           +  + +L D ALY +K+QGRN V +
Sbjct: 473 QRGLIELADRALYAAKSQGRNRVNV 497


>ref|NP_762292.1| Response regulator [Vibrio vulnificus CMCP6]
 gb|AAO07282.1| Response regulator [Vibrio vulnificus CMCP6]
          Length = 312

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEEF +++ G    Q+ + AE I +++ADL   HA S    ++T+S GV   ++ N REE
Sbjct: 225 GEEFVVLLGGSDAEQAVKAAERIHKAVADLSYPHAFSAVSDVVTLSQGV-YTFIPNGREE 283

Query: 69  --DIYKLGDDALYQSKAQGRNCVTMFQ 93
              IY+  D ALYQ+K +G+N    F+
Sbjct: 284 LQTIYQFADKALYQAKLEGKNRYVTFR 310


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 120,200,971
Number of extensions: 3882332
Number of successful extensions: 11944
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 12267
Number of HSP's successfully gapped: 49
Length of query: 93
Length of database: 757,237,578
Length adjustment: 61
Effective length of query: 32
Effective length of database: 591,616,539
Effective search space: 18931729248
Effective search space used: 18931729248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)