BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0040.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00098588.1| COG0726: Predicted xylanase/chitin deacetylas... 188 3e-46 ref|NP_781419.1| putative peptidoglycan N-acetylglucosamine deac... 161 3e-38 ref|NP_562393.1| probable endo-1,4-beta-xylanase [Clostridium pe... 144 7e-33 ref|NP_349011.1| Predicted xylanase/chitin deacetylase [Clostrid... 138 2e-31 ref|NP_349968.1| Xylanase/chitin deacetylase family enzyme [Clos... 138 4e-31 >ref|ZP_00098588.1| COG0726: Predicted xylanase/chitin deacetylase [Desulfitobacterium hafniense] Length = 357 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%) Query: 143 KTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIGNHTY 202 K VYLT DDGPS+ T +L+IL+++ V ATFFV+G Q E+ PEL+ +EQG+AIGNHTY Sbjct: 154 KIVYLTIDDGPSENTVHILDILKQEEVNATFFVIGTQVERYPELLKKAYEQGNAIGNHTY 213 Query: 203 NHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGHFDKTYFRLLAQAGYS 262 +HNY ++Y S F + +K+ EE++ + GVRP+++R PGGT G+F +Y+ + Y Sbjct: 214 SHNYSEIYQSPEAFVANLKKNEELIYKLIGVRPKVIRTPGGTHGNFHISYYNAVDAQDYL 273 Query: 263 VMDWTADSGDSRRKGVPAADILRESVADLTA-SRVILLLHDGGGHEQSAKALPEIIKRYK 321 V DW +GD+ VPA +++ R+ILL+HD G + ALP+II+ K Sbjct: 274 VYDWNVSTGDASAPLVPAETLIKNVKEQAPGRDRIILLMHDAPGKWTTVDALPKIIRFLK 333 Query: 322 AAGYTFGVLDGEVQPVQF 339 GY FGVL EV P+ F Sbjct: 334 EQGYEFGVLSPEVAPILF 351 >ref|NP_781419.1| putative peptidoglycan N-acetylglucosamine deacetylase [Clostridium tetani E88] gb|AAO35356.1| putative peptidoglycan N-acetylglucosamine deacetylase [Clostridium tetani E88] Length = 326 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 74/197 (37%), Positives = 126/197 (63%), Gaps = 8/197 (4%) Query: 139 QTKQKTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIG 198 + K+K +LTFDDGPS+ TP++L+IL++ +K+TFFVLG + + + E+GHAIG Sbjct: 129 EDKKKIAFLTFDDGPSEYTPQILDILKKYNIKSTFFVLGTSVDSYSQYLKREVEEGHAIG 188 Query: 199 NHTYNHNYRDLYSSFT--EFWSQIKQTEEIVRNITG--VRPQLVRAPGGTFGHFDKTYFR 254 NHTYNHN + + ++T F +K+ ++ +R + G + LVR PGG+F H K+Y Sbjct: 189 NHTYNHNIK-YFGNYTPQSFVQDVKKCDDSIRRVLGQDFKTNLVRFPGGSFNH--KSYEN 245 Query: 255 LLAQAGYSVMDWTADSGDSRRKGVPAADILRESVADL-TASRVILLLHDGGGHEQSAKAL 313 L +AG+ +DW ++GD+RR VP ++L D+ + +++L+HD + + ++L Sbjct: 246 ELLKAGFKHIDWNIENGDARRLNVPKEELLNNVKRDMANHNHLVILMHDSATKKTTVESL 305 Query: 314 PEIIKRYKAAGYTFGVL 330 PE+I+ K+ G+ FG++ Sbjct: 306 PELIEHLKSQGFEFGII 322 >ref|NP_562393.1| probable endo-1,4-beta-xylanase [Clostridium perfringens] dbj|BAB81183.1| probable endo-1,4-beta-xylanase [Clostridium perfringens str. 13] Length = 238 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 129/216 (59%), Gaps = 9/216 (4%) Query: 132 AKPTLPAQTKQKT--VYLTFDDGPS-KITPKVLEILRRQGVKATFFVLGEQAEQRPELIS 188 +KP A+ ++ T ++LTFDDGP K+T ++L L+ VKATFF++GE E+ P+L+ Sbjct: 22 SKPIKAAELEESTKKIFLTFDDGPGGKVTEEILNTLKENDVKATFFLIGELVEKHPDLVK 81 Query: 189 AIWEQGHAIGNHTYNHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGH- 247 + ++GH+IG HT+ H +Y + + F + + +E + + G + +R P G+ Sbjct: 82 RMNDEGHSIGVHTFTHERNKIYRNDSSFLEENLKAQESIEKVIGKKVFSLRFPFGSNNST 141 Query: 248 --FDKTYFRLLAQAGYSVMDWTADSGDSRRKGVPAADILRESVADLTASRVILLLHDGGG 305 K+ L + G+ + DWT DS D+ + + I+++S+++ + ++LL+H G Sbjct: 142 YTLKKSLVDSLHEQGFRIYDWTVDSTDALNPNLSPSSIVQKSISN--SDYIVLLMHCGYS 199 Query: 306 HEQSAKALPEIIKRYKAAGYTFGVLDGEVQPVQFRV 341 + SAKALP IIK +K+AGY+F V+D E P +R+ Sbjct: 200 NNNSAKALPSIIKHFKSAGYSFEVID-ESTPEIYRL 234 >ref|NP_349011.1| Predicted xylanase/chitin deacetylase [Clostridium acetobutylicum] pir||D97195 probable xylanase/chitin deacetylase [imported] - Clostridium acetobutylicum gb|AAK80351.1| Predicted xylanase/chitin deacetylase [Clostridium acetobutylicum] Length = 280 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 10/195 (5%) Query: 142 QKTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIGNHT 201 +K YLTFDDGPS T K+L IL + ATFF++G+ AE+ P L G + NHT Sbjct: 89 KKIAYLTFDDGPSINTAKILNILNENNIHATFFLIGKNAEEYPSLAKLEVTDGETVANHT 148 Query: 202 YNH--NYRDLYSSFTEFWSQIKQTEEIVRNITGVR--PQLVRAPGGTFGHFDKTYFRLLA 257 Y+H NY++ F E I + + I++ I G + P+ VR PGG+FG+ + + +A Sbjct: 149 YSHVLNYKEQPKQFVE---DINRCDLILKGILGDKYIPKFVRFPGGSFGNKLQPFKDAVA 205 Query: 258 QAGYSVMDWTADSGDSRRKGVPAADILRESVADLTASR--VILLLHDGGGHEQSAKALPE 315 GY +DW A +GD+ R VP D L ++V + V++L+HD G + +ALP+ Sbjct: 206 GEGYRYLDWNALNGDAERPNVP-VDQLIDNVKKTVEGKKVVVILMHDAGAKTTTVQALPQ 264 Query: 316 IIKRYKAAGYTFGVL 330 II+ K+ G++FG L Sbjct: 265 IIQYLKSQGFSFGKL 279 >ref|NP_349968.1| Xylanase/chitin deacetylase family enzyme [Clostridium acetobutylicum] pir||A97315 xylanase/chitin deacetylase family enzyme [imported] - Clostridium acetobutylicum gb|AAK81308.1| Xylanase/chitin deacetylase family enzyme [Clostridium acetobutylicum] Length = 282 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 9/199 (4%) Query: 136 LPAQTKQKTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGH 195 L +KT YLTFDDGPS T K+L+IL +KATFF+LG+ AE P+L+ ++ G+ Sbjct: 82 LQKNNPKKTAYLTFDDGPSPNTTKILDILNANKIKATFFILGKNAEMHPDLVKLEYKYGN 141 Query: 196 AIGNHTYNHNYRDLYSSFTEFWSQIKQTEEIVRNITGVR--PQLVRAPGGTFGHFDKT-- 251 +IGNHTY+HN R S EF + + + + ++++I G + P+L+R PGG+ G +T Sbjct: 142 SIGNHTYSHNIR-YNESTDEFLADVNRCDSVLKSILGDKYTPKLLRFPGGS-GAPRETRL 199 Query: 252 --YFRLLAQAGYSVMDWTADSGDSRRKGVPAADILRESVADL-TASRVILLLHDGGGHEQ 308 + + + AGY +DW ++GD+ + P ++ + V++L+HD Sbjct: 200 APFRQAVTNAGYRYLDWNDETGDAEYRLAPVPTLMSNLEHNTGNQHTVVVLMHDAAAKTT 259 Query: 309 SAKALPEIIKRYKAAGYTF 327 S ALP++I+ K GYTF Sbjct: 260 SVDALPQVIQYLKNLGYTF 278 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 697,149,398 Number of extensions: 27536911 Number of successful extensions: 67081 Number of sequences better than 1.0e-05: 343 Number of HSP's gapped: 66615 Number of HSP's successfully gapped: 343 Length of query: 493 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 363 Effective length of database: 404,274,708 Effective search space: 146751719004 Effective search space used: 146751719004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)