BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0037.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389791.1| similar to hypothetical proteins [Bacillus subt... 217 2e-55 ref|NP_469808.1| similar to putative transcription regulator [Li... 193 5e-48 ref|NP_722016.1| conserved hypothetical protein [Streptococcus m... 169 6e-41 ref|NP_971273.1| transcriptional regulator, putative [Treponema ... 162 9e-39 ref|NP_350080.1| Transcription regulator, YOBV B.subtilis homolo... 157 3e-37 >ref|NP_389791.1| similar to hypothetical proteins [Bacillus subtilis] pir||D69900 conserved hypothetical protein yobV - Bacillus subtilis gb|AAB84472.1| transcription regulator [Bacillus subtilis] emb|CAB13802.1| yobV [Bacillus subtilis subsp. subtilis str. 168] Length = 313 Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/292 (44%), Positives = 178/292 (60%), Gaps = 16/292 (5%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K++RLL++V+LL+++ VQA ELA++FEVSVRTIYRDI++IN AGIP+VT QG+ GGIG Sbjct: 1 MKLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIG 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSS-YGAGEHNLLMEKITSVIPPSKSHAFRSKTT 119 +ME YRL+R L E EL I +ALQSVSS Y H+ +KI +IP + AF+ +T Sbjct: 61 IMETYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTE 120 Query: 120 QLIVDFSPWGL---QGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKG 176 + +D + WG Q L E++S A+D ++F Y +A G+ R EPYTLV K Sbjct: 121 KWFIDMTAWGHTEDQKTLREKIS---AAIDRLLTISFTYTSASGETLLRETEPYTLVCKA 177 Query: 177 AGWYLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGW--KEPLNTQTV 234 WYLY +C+ R DFR FKL RMK L ++F R DI L LPW + W K+ L + Sbjct: 178 GHWYLYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQKDRLTELVI 237 Query: 235 VLHFSAE---GRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFG 283 ++ SA G + D C E D ++ L E+ WL GFLL FG Sbjct: 238 LVQPSARQRIGEWFGYDVLHC--CEEDEICQAVISL--PEDQWLIGFLLQFG 285 >ref|NP_469808.1| similar to putative transcription regulator [Listeria innocua] pir||AH1490 probable transcription regulator homolog lin0464 [imported] - Listeria innocua (strain Clip11262) emb|CAC95696.1| lin0464 [Listeria innocua] Length = 310 Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 162/289 (56%), Gaps = 13/289 (4%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K+DRL+SIV++L+++ + A+ELAD FEVS+RTIYRDID+I+ AG+P+ + G GG Sbjct: 1 MKVDRLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFE 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGEHNL-LMEKITSVIPPSKSHAFRSKTT 119 +M Y++D V + +L+ I L S+S+ G+ + + KI S IP ++ K Sbjct: 61 IMPDYKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKAN 120 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 Q+ +D S W ++ + ++K AL E+ + F+Y+ G + RIVEPY LV K + W Sbjct: 121 QIYIDLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHW 180 Query: 180 YLYGFCIQRQDFRLFKLLRMKSL-----VKEARSFERLDIPLQDLPWTEGWKEPLNTQTV 234 YLYG+C R DFRLF+L RM L R F++ + ++D+ + + Sbjct: 181 YLYGYCQNRNDFRLFRLSRMSGLQILEDTFTLRDFQKPQLEMEDIVAIMQIEIKIR---- 236 Query: 235 VLHFSAEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFG 283 +H S R L DY E DG YIV + EN + Y LLSFG Sbjct: 237 -IHQSIIDRVL--DYCSYENFYPDGEEHYIVSFPFIENEYHYDILLSFG 282 >ref|NP_722016.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN59322.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 307 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 11/269 (4%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K++RLL+I+ LL +R + AKELA+ FEVS RTIYRD++S+N AGIP+V+Y G +GG+ Sbjct: 1 MKLERLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGLS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGEHNLLMEKITSVIPPSKSHAFRSKTTQ 120 LM+ Y++D+ +L++ + ++++AL+ + S + L+ I ++P KS+ Sbjct: 61 LMKNYQIDKRILSKADTKNLYSALKGLQS--IKQQPELIALIAKLLPEEKSNPL----AD 114 Query: 121 LIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGWY 180 ++FS W +++++ +L++A++E V DY+++ G+ R +EPY LV K + WY Sbjct: 115 YDINFSSWYADSLIQKKIEILQKAIEERICVLLDYISSSGR-RKRKIEPYQLVFKDSAWY 173 Query: 181 LYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIP---LQDLPWTEGWKEPLN-TQTVVL 236 L+ FC +RQ FRLFKL RM SL F P L+ + +++ EP+ VVL Sbjct: 174 LHAFCHKRQAFRLFKLRRMVSLTLLEEKFPGRPYPALTLKSIAYSDFSLEPVEGYDKVVL 233 Query: 237 HFSAEGRYLAEDYFDCEELEADGNGGYIV 265 + E + D L A G + Sbjct: 234 TYHPEDAFAITKVMDASILAASEKEGMVT 262 >ref|NP_971273.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] gb|AAS11154.1| transcriptional regulator, putative [Treponema denticola ATCC 35405] Length = 301 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 163/310 (52%), Gaps = 11/310 (3%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 ++ +RL IV +L++R A+ELA F VSVRTIYRD+D ++ AGIPV T QG GGI Sbjct: 1 MRSERLFEIVFILLSRKQTTAQELAKKFGVSVRTIYRDMDILSSAGIPVYTMQGTGGGIF 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGEHNLLMEKITSVIPPSKSHAFRSKTTQ 120 + E Y +++++LT+ E I ALQ +S ++ +++++ F+ Sbjct: 61 IDESYTINKSILTKGEQEKILLALQCLSPIDEIHTESILNRLSAI--------FQKNADW 112 Query: 121 LIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGWY 180 + +D+S W + LK+A+ E AV +Y+++ G+ + R V P L++K WY Sbjct: 113 IRIDYSRWDNKND-HHLFKTLKDAILERRAVKLEYLSSYGEKTERTVYPLRLLYKSKAWY 171 Query: 181 LYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFSA 240 +C ++ RLF+L R+ S++K ++F R D+ L +P + P T + L +A Sbjct: 172 AECYCTEKNACRLFRLTRILSIIKTLKTFNRADL-LGKIPDDKKAAPPPLTN-IKLKCTA 229 Query: 241 EGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGTXXXXXXXXXXXXXXAG 300 + Y D F E + + +G Y + A ++W+ GF+LS GT A Sbjct: 230 KTAYRLYDEFPPELIAKNSDGSYTLNAALPFDSWVCGFILSLGTEVEILEPENLKTEIAQ 289 Query: 301 LAAEIAAKYK 310 LA EI K++ Sbjct: 290 LAEEIMKKHR 299 >ref|NP_350080.1| Transcription regulator, YOBV B.subtilis homolog [Clostridium acetobutylicum] pir||A97329 transcription regulator, YOBV B. subtilis homolog [imported] - Clostridium acetobutylicum gb|AAK81420.1| Transcription regulator, YOBV B.subtilis homolog [Clostridium acetobutylicum] Length = 300 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 157/285 (55%), Gaps = 14/285 (4%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 ++++RL I+ +L+ + V A+ELA+ EVS RTIYRDI++++ AGIPV +G GGI Sbjct: 1 MQVNRLFQIIYILLEKNSVTARELAEKIEVSKRTIYRDIETLSTAGIPVYMTKGKGGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSS--YGAGEHNLLMEKITSVIPPSKSHAFRSKT 118 ++ + L++ +LTE E ++I +++++V++ + E ++ K+ S++ + T Sbjct: 61 ILPNFILNKAILTEEEKSEIISSIRAVNAVNFSDSEAEKVLIKLNSILG-------ENDT 113 Query: 119 TQLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAG 178 + VDFS WG +E + LK A+ V FDY +A G+ R V P L KG Sbjct: 114 DWIEVDFSNWGNAEKEKETFNNLKTAILSKKVVKFDYSSAKGENISRKVCPLKLCFKGQS 173 Query: 179 WYLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHF 238 WY+YG+C R D+R FKL R+K L SF + P + + + + T+ + Sbjct: 174 WYMYGYCGIRNDYRFFKLRRIKDLYVSEESF-NIKAPKKIMKEDNVFYDEF--ITLKMKI 230 Query: 239 SAEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFG 283 S++ Y D F E+ + +G +IV Y + WL+ ++ SFG Sbjct: 231 SSKMAYRIYDEF--EDFKKLDDGSFIVTAEYPKGEWLFSYISSFG 273 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 425,633,651 Number of extensions: 17368550 Number of successful extensions: 38455 Number of sequences better than 1.0e-05: 94 Number of HSP's gapped: 38387 Number of HSP's successfully gapped: 94 Length of query: 312 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 187 Effective length of database: 417,850,203 Effective search space: 78137987961 Effective search space used: 78137987961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)