BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0035.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470995.1| similar to transcription regulator MarR family ... 104 5e-22 ref|NP_465143.1| similar to transcription regulator MarR family ... 100 9e-21 ref|NP_690994.1| transcriptional regulator [Oceanobacillus iheye... 95 4e-19 gb|EAJ99409.1| unknown [environmental sequence] 66 2e-10 ref|NP_111765.1| Transcription regulator (SlyA-related) [Thermop... 65 6e-10 >ref|NP_470995.1| similar to transcription regulator MarR family [Listeria innocua] pir||AB1640 transcription regulator MarR family homolog lin1659 [imported] - Listeria innocua (strain Clip11262) emb|CAC96890.1| lin1659 [Listeria innocua] Length = 146 Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 88/139 (63%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ D+ + ELA+ + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQKESDLTLGELAERMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+ES+RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 E +E+L +H+EIITILE+ Sbjct: 123 ERLKEMLEMHQEIITILER 141 >ref|NP_465143.1| similar to transcription regulator MarR family [Listeria monocytogenes EGD-e] pir||AB1277 transcription regulator MarR family homolog lmo1618 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99696.1| lmo1618 [Listeria monocytogenes] Length = 146 Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 89/139 (64%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ ++ + ELA+ + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQRESELTLGELAERMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+E++RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNENNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 + +E+L++H+EIITILE+ Sbjct: 123 DRLKEMLKMHQEIITILER 141 >ref|NP_690994.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC12029.1| transcriptional regulator (marR family) [Oceanobacillus iheyensis HTE831] Length = 150 Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 80/143 (55%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+++ I SFR + + + MW A+ L IT QL ++ + HP++ + ELA+ +++ Sbjct: 4 EEKITKIIHSFREVNRFYYKQMWHHADDLGITVVQLQTMKHISEHPNISLQELAEKMNIS 63 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S S VDR+VKA + R++S SDRR L +T++GR+ + K+ + L L + Sbjct: 64 KSTVSSTVDRLVKASFLRREQSTSDRRAINLNLTEEGRQKEAEGKKLFFARLHELSEVSD 123 Query: 126 EDARELLRLHREIITILEQGREN 148 ED L RLH+ II L R + Sbjct: 124 EDTESLFRLHQLIIEKLTTERSD 146 >gb|EAJ99409.1| unknown [environmental sequence] Length = 151 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 11/97 (11%) Query: 9 LDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLGNSA 68 LD+I FRCI + F +T Q +LR L H + + L+DL + + + Sbjct: 18 LDEIMPKFRCIFNEFA-----------LTEQQWRILRVLWEHDKITLGRLSDLTLIPSPS 66 Query: 69 ASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREI 105 G+VDR++KA LI R+RS++DRR+ + T++GR + Sbjct: 67 LVGIVDRLIKANLIRRERSDTDRRMIFVVATEEGRNL 103 >ref|NP_111765.1| Transcription regulator (SlyA-related) [Thermoplasma volcanium] dbj|BAB60411.1| hypothetical protein [Thermoplasma volcanium] Length = 154 Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 56/84 (66%) Query: 29 KDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLGNSAASGVVDRMVKAGLITRQRSE 88 ++ K++++ T+ ++R L + + + +A L+++ +GVVD+M + L+TR R Sbjct: 34 RNLNKIDLSITEFTIMRHLIENGPMSMAAIASLINVTPGWITGVVDKMEEKNLVTRNRDS 93 Query: 89 SDRRIFKLAMTDKGREIREQSKQS 112 +DRRI K+A+TD+GRE+ E +K++ Sbjct: 94 TDRRIIKIAITDRGREVYENAKKN 117 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 200,434,059 Number of extensions: 6863549 Number of successful extensions: 24490 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 24551 Number of HSP's successfully gapped: 79 Length of query: 151 Length of database: 757,237,578 Length adjustment: 110 Effective length of query: 41 Effective length of database: 458,576,688 Effective search space: 18801644208 Effective search space used: 18801644208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)