BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0034.p
         (228 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060284.1| hypothetical protein [Clostridium thermocellu...   160   2e-38

>ref|ZP_00060284.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 228

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 9   WNAIHQQLTRIITKPEEHANAVALFLELHDCLYASNGNNPEQTNYEDELLKDLREQTMRS 68
           WN   ++L  II   ++    + L  +LH  +++ +         EDEL + L ++T  +
Sbjct: 8   WNPKQKRLKNIILNEDKFNETIELIQDLHSMVHSHDVYGRNIPTLEDELWEGLDKKTFVT 67

Query: 69  YPVHTANSNNSIVWHIWHSARIEDITMNILTADRDQILHSGHYADKLHTPFIHSGNGMSG 128
            P      + +I W+IWH  RIED+T+NIL AD  Q     ++  +L+     +GN MS 
Sbjct: 68  MP---TKEDVTIAWNIWHITRIEDLTVNILIADEIQEFKRQNWPARLNIEVSDTGNAMSD 124

Query: 129 QEIAEFSAAVDLEALLEYRQAVAAGTRSIIAGLQPGQFRNKPRSTQISRISAEGAVKETE 188
            EI   S  +++E L EYR+AV   TR +I  L+P  F+ K + T+++RI  EG V + E
Sbjct: 125 DEIISLSEKINMEELREYRKAVGKRTREVILKLKPDDFKKKVQKTRLNRILDEGGVLDVE 184

Query: 189 --QWLIDYWGGKTIAGLVLMPATRHNFVHLNKAMRVKLKLQK 228
             +WL+D+WG K IAGL+LMP TRH  VHLN ++++K K  +
Sbjct: 185 DSKWLLDFWGKKNIAGLILMPITRHQVVHLNDSLKLKKKCSR 226


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 326,739,328
Number of extensions: 12548468
Number of successful extensions: 30503
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 30506
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 757,237,578
Length adjustment: 121
Effective length of query: 107
Effective length of database: 428,710,599
Effective search space: 45872034093
Effective search space used: 45872034093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)