BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0031.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180915.1| hypothetical protein Mther113901 [Moorella th... 167 4e-40 ref|ZP_00099760.1| COG1316: Transcriptional regulator [Desulfito... 161 3e-38 ref|ZP_00103388.1| COG1316: Transcriptional regulator [Desulfito... 159 1e-37 ref|NP_622572.1| Transcriptional regulator [Thermoanaerobacter t... 159 1e-37 ref|NP_469807.1| similar to B. subtilis transcription regulator ... 152 1e-35 >ref|ZP_00180915.1| hypothetical protein Mther113901 [Moorella thermoacetica ATCC 39073] Length = 414 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 135/210 (64%), Gaps = 7/210 (3%) Query: 75 GTEP--VNILLMGVDARGVKKGEVPRSDTMLVASLDPVKKKFYVFSILRDTYVSIPEHGK 132 G++P +NILL+G DAR +K V +DT+++A D ++ + SI RDT V+IP HG Sbjct: 46 GSQPGTLNILLLGTDARPGEK--VGNTDTIILAHFD--GERLALLSIPRDTRVNIPGHGV 101 Query: 133 ERINTAIT-HGPNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVGGVDYEVEKDMVYKT 191 ++IN A + GP+ V++L G+PI YV + GFIK++D +GGV + +DM Y Sbjct: 102 DKINAAYSIGGPDLTTSIVADLTGVPISKYVLLRWDGFIKIIDLLGGVTVNIPRDMYYYD 161 Query: 192 KADGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVISTTSI 251 DGP+Y I+LKKG QHLDG AL +VRFR +A D RT +Q+ +KA+ +KV ++ Sbjct: 162 PVDGPQYKINLKKGLQHLDGHQALAFVRFRKEALGDIDRTGQQQELIKALLEKVRQPGTL 221 Query: 252 IKLPNILSQVTPYIDTNLDVNDMWKLATVG 281 +K+P +L ++ ++TN+ +++M +A G Sbjct: 222 LKMPRLLPEIYKNVETNMGLDEMLTMARAG 251 >ref|ZP_00099760.1| COG1316: Transcriptional regulator [Desulfitobacterium hafniense] Length = 439 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 8/203 (3%) Query: 79 VNILLMGVDARGVKKGE-VPRSDTMLVASLDPVKKKFYVFSILRDTYVSIPEHGKERINT 137 V +LL+G+D R GE + +DT++VASLD KK + S+ RDT V I KE++N Sbjct: 106 VTVLLIGMDNR---PGEALSNTDTLMVASLDQKSKKMVLLSVPRDTQV-ILNQKKEKVNA 161 Query: 138 --AITHGPNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVGGVDYEVEKDMVYKTKADG 195 + GP + Q + ELLG PI YV T+FQGF +VD +GG+ +VEKDM Y T + Sbjct: 162 IARLQKGPISTQQYLQELLGTPIDGYVLTNFQGFKNIVDGLGGITIDVEKDMYYDT-GEA 220 Query: 196 PEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVISTTSIIKLP 255 + I+LKKG Q L+G+ ALQY RFR+D +D TRT RQ+ +KA+ + + +I KLP Sbjct: 221 QDRFINLKKGVQRLNGTQALQYARFRNDELADITRTSRQQEVIKAIVAEATTPRNIPKLP 280 Query: 256 NILSQVTPYIDTNLDVNDMWKLA 278 I+ +V IDTNL++ +W LA Sbjct: 281 IIIPKVYQAIDTNLNLGQIWALA 303 >ref|ZP_00103388.1| COG1316: Transcriptional regulator [Desulfitobacterium hafniense] Length = 426 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 131/202 (64%), Gaps = 6/202 (2%) Query: 79 VNILLMGVDARGVKKGEVP-RSDTMLVASLDPVKKKFYVFSILRDTYVSIPEHGKERIN- 136 +++LL+G D R GE +DT+++A++DP + + SI RDT VSIP H +IN Sbjct: 56 ISVLLIGADQR---PGEQSFNTDTIILATIDPKSARVSLLSIPRDTRVSIPGHKDIKING 112 Query: 137 TAITHGPNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVGGVDYEVEKDMVYKTKADGP 196 A + + VS+L+GIPI Y+ T+F GF +++D +GG+ +VEKDM Y+T D Sbjct: 113 VAPLTDLDNLVDVVSDLVGIPISGYIQTNFNGFKQIIDTLGGITVDVEKDMYYETGDDED 172 Query: 197 EYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVISTTSIIKLPN 256 + I+LKKG Q LDGS ALQY RFR+D D +RT RQ+ LKAVA +++ ++ KLP Sbjct: 173 GF-INLKKGLQKLDGSKALQYARFRNDGLGDISRTARQQIVLKAVAGEMLKLGTLPKLPW 231 Query: 257 ILSQVTPYIDTNLDVNDMWKLA 278 ++ Q+ ++TNL + DM+K+A Sbjct: 232 LIPQLNEAVNTNLQLGDMFKIA 253 >ref|NP_622572.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM24176.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 391 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 132/222 (59%), Gaps = 8/222 (3%) Query: 61 PSPSAETVQPPKWEGTEP--VNILLMGVDARGVKKGEVPRSDTMLVASLDPVKKKFYVFS 118 PS ++ P K + P + +L++G+D + RSDTM+V S + +K Y+ S Sbjct: 32 PSDASLMNLPTKEDKKNPEELKVLILGIDE--TSPDDPHRSDTMMVISYNVNTQKGYILS 89 Query: 119 ILRDTYVSIPEHGKERINTAI-THGPNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVG 177 I RDT V+IP HG ++IN A GP AM+ VS+L+G I YYV D++GF KLVDA+G Sbjct: 90 IPRDTMVTIPGHGVQKINAAYPIGGPKLAMEEVSQLIGEDISYYVKIDYEGFKKLVDAIG 149 Query: 178 GVDYEVEKDMVYKTKADGPEYDIDLKKGFQHLDGSMALQYVRFRHD-ATSDFTRTERQRG 236 GV+ V DM Y A I LKKG+QHLDG ALQ VRFRH A D R + QR Sbjct: 150 GVEMNVPIDMNYDDYAGN--LHIHLKKGWQHLDGEEALQLVRFRHGYAEQDLERVKVQRE 207 Query: 237 FLKAVADKVISTTSIIKLPNILSQVTPYIDTNLDVNDMWKLA 278 FL A DK+ S + ++KLP +L V Y++TN+ + M K A Sbjct: 208 FLLAALDKIKSPSILLKLPQLLRTVNQYVETNIPPSLMVKYA 249 >ref|NP_469807.1| similar to B. subtilis transcription regulator LytR [Listeria innocua] pir||AG1490 B. subtilis transcription regulator LytR homolog lin0463 [imported] - Listeria innocua (strain Clip11262) emb|CAC95695.1| lin0463 [Listeria innocua] Length = 309 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 21/258 (8%) Query: 77 EPVNILLMGVDARGVKKGEVPRSDTMLVASLDPVKKKFYVFSILRDTYVSIPEHGKERIN 136 + +N+LL+G D+RG +G RSD++++A + + SI+RDTYV IP HGK +IN Sbjct: 64 DEINVLLIGSDSRGEDQG---RSDSLMIAHYNTKTNTPKLVSIMRDTYVDIPGHGKNKIN 120 Query: 137 TAITHG-PNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVG--GVDYEVEKDMVYKTKA 193 A ++G P QT+ E G+ +QYYV +F+GF K+VD V G+ EKDM Sbjct: 121 AAYSYGGPELVRQTIKENFGVDVQYYVVANFEGFPKIVDTVAPEGIKINAEKDM------ 174 Query: 194 DGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVISTTSIIK 253 D ++KKG Q +DG LQY RFR DA DF R RQ+ L+A+ ++ I + K Sbjct: 175 -SKNIDANIKKGEQVMDGKTLLQYARFRKDAEGDFGRIRRQQQVLEALKEQAIDVGDVTK 233 Query: 254 LPNILSQVTPYIDTNLDVNDMWKLATVGYDSSMGGSA-----QIPPMNLLTEEKTSGGSA 308 +P+++ ++ Y TN+ L ++G D +G + IP E+ G A Sbjct: 234 IPDVIGKLQGYSSTNIPTG---TLMSIGADFLLGKTETMEKFAIPVEGKWHNERIDGAGA 290 Query: 309 VLGISSENKLKKFVQDTL 326 VL + K +QD L Sbjct: 291 VLRLDDMAANAKALQDFL 308 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 443,962,041 Number of extensions: 18045642 Number of successful extensions: 43263 Number of sequences better than 1.0e-05: 253 Number of HSP's gapped: 42807 Number of HSP's successfully gapped: 253 Length of query: 350 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 224 Effective length of database: 415,135,104 Effective search space: 92990263296 Effective search space used: 92990263296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)