BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0029.p
         (196 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_979324.1| hypothetical protein BCE3021 [Bacillus cereus A...    83   4e-15
ref|ZP_00099707.1| hypothetical protein [Desulfitobacterium hafn...    70   4e-11

>ref|NP_979324.1| hypothetical protein BCE3021 [Bacillus cereus ATCC 10987]
 gb|AAS41932.1| hypothetical protein BCE3021 [Bacillus cereus ATCC 10987]
          Length = 200

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 3   NVYNDEAKQIDEQILELFRQRKAVSGGKGLFPDTETIEEWATRFELQPDEITFILSSL-- 60
           + Y++    IDE+I  L ++RK +SGG   FP  ETI +WA ++E  PD +  + SS+  
Sbjct: 11  DYYDERLYTIDEKICALLKERKELSGGDPGFPHDETIYKWAKQYEFYPDYLNSLFSSMMD 70

Query: 61  -NEARPRRKFWEEPGVLRGVLPIMQTTLQDDVEYTLTHALQHEKLSIVTLEIKY--LKET 117
            +E +PR     EP   +  +P+ +T     + YT+T   Q+   S+V L   +  + + 
Sbjct: 71  ESEFKPRV----EPTKFQKHIPVFKTYEHKGIMYTVTFIRQYANASVVYLYSDWDSVNDA 126

Query: 118 VGQVSINPLLTLAVVGDTDYEIDGYGARGGGAHFHMQFMVWPPLPEDLS 166
             +   +    L++  D  Y+    G  G   HF   F++ P LP++LS
Sbjct: 127 FNENKPHSFFQLSI--DDTYDCWSEGGGGTDGHFSHHFVISPALPDNLS 173


>ref|ZP_00099707.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 200

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 4/169 (2%)

Query: 3   NVYNDEAKQIDEQILELFRQRKAVSGGKGLFPDTETIEEWATRFELQPDEITFILSSLNE 62
           + Y  E   +DE+I  L  +RK +S     FPD + I +W+  F L+   +  + S L  
Sbjct: 11  DYYCQELAPLDEEICSLLAKRKELSNQNPGFPDPDLIAQWSKAFGLKEYWLCLVFSHLLS 70

Query: 63  ARPRRKFWEEPGVLRGVLPIMQTTLQDDVEYTLTHALQHEKLSIVTLEIKYL-KETVGQV 121
            + +     EP      +P++++   D + +T+T+  Q+   SIV +E + +  E  G  
Sbjct: 71  EK-QIHIPVEPVEFLKFIPVLRSVTVDKLSHTVTYLKQYSNASIVYIETEVITSEPFGGH 129

Query: 122 SINPLLTLAVVGDTDYEIDGYGARGGGAHFHMQFMVWPPLPEDLSFVEF 170
             + +  L++    +Y     G  G G      F+V PPLP+D+S VEF
Sbjct: 130 LGHAMFELSIA--PEYLCTPNGGGGSGKTMQHSFVVTPPLPDDVSEVEF 176


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 301,962,703
Number of extensions: 12230587
Number of successful extensions: 24714
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 24710
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 77
Effective length of database: 434,140,797
Effective search space: 33428841369
Effective search space used: 33428841369
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)