BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0024.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830128.1| UV-endonuclease (UvsE/Uve1/UvdE Family) [Bacill... 290 5e-77 ref|NP_976596.1| UV-endonuclease, putative [Bacillus cereus ATCC... 280 4e-74 ref|NP_654178.1| AP2Ec, AP endonuclease family 2 [Bacillus anthr... 278 1e-73 ref|ZP_00062121.1| COG4294: UV damage repair endonuclease [Clost... 251 2e-65 ref|NP_243463.1| BH2597~unknown conserved protein [Bacillus halo... 239 5e-62 >ref|NP_830128.1| UV-endonuclease (UvsE/Uve1/UvdE Family) [Bacillus cereus ATCC 14579] gb|AAP07329.1| UV-endonuclease (UvsE/Uve1/UvdE Family) [Bacillus cereus ATCC 14579] Length = 320 Score = 290 bits (741), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 145/334 (43%), Positives = 197/334 (58%), Gaps = 14/334 (4%) Query: 1 MIVRFGYVAMSTVIPDCSPSKTMTMASFNKLNDREAGLRRLEAIARGNLHNTLRLLKHNV 60 M+VR GYVAMS + + SPS+TMT A F KL+DR+A +R+LE IA NL N LRLLKHN Sbjct: 1 MLVRLGYVAMSVHLKNASPSQTMTYAQFQKLDDRDAAIRKLERIANSNLENCLRLLKHNK 60 Query: 61 GSDIRVYRLTSKLIPLATHPDLQDWNPFEALAADFAEAGSYVKKHGLRVSFHPDHFTVLS 120 G DI +RL+SKLIPLA H +L +WN L + + G Y +R+ FHPDHF VL+ Sbjct: 61 GHDISFFRLSSKLIPLANHEELLEWNYIRPLKENLKKLGEYAVHMNMRIDFHPDHFVVLN 120 Query: 121 TPRPEVLASSVRDLQHHVDMLNAMDLPATAKNNIHIGGAYGDKPAAAARFLEHFAELPLD 180 +P V SV+ LQ H +L M + + +H+GG Y DK A RF+E+++ +P Sbjct: 121 SPEESVFKQSVKTLQMHKKLLKGMGIEHKQRCVLHVGGGYKDKELALERFIENWSNVPRG 180 Query: 181 LQERTTLENDDKTFNAPETLEVSRRLGVPMVLDIHHQWVNNEGELPWELWPEIMKTWQTP 240 +QE LENDD TF ETL + +L +P+V D+HH +NNE E +E W ++ TW+T Sbjct: 181 IQEMIILENDDTTFTLEETLYLGEKLDIPVVFDLHHHMMNNEQEDWYEDWARVVHTWETS 240 Query: 241 LALKDVLPGETLPPKIHVXXXXXXXXXXXHADGVEPAPLLAFLKRIAADTPAVDAMIEAK 300 L LP K+H+ HAD + L+FL+RI P +D MIEAK Sbjct: 241 L----------LPIKMHISSPREGKDPRAHADYINVDAFLSFLRRIKGSVPQIDCMIEAK 290 Query: 301 AKDGALFGLMEALKELAEAGNGITVLDGASVNIE 334 KD +LF LM L E + + ++DGAS I+ Sbjct: 291 MKDESLFQLMRDLSEQVD----VEIIDGASFYIK 320 >ref|NP_976596.1| UV-endonuclease, putative [Bacillus cereus ATCC 10987] gb|AAS39204.1| UV-endonuclease, putative [Bacillus cereus ATCC 10987] Length = 320 Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 140/334 (41%), Positives = 196/334 (58%), Gaps = 14/334 (4%) Query: 1 MIVRFGYVAMSTVIPDCSPSKTMTMASFNKLNDREAGLRRLEAIARGNLHNTLRLLKHNV 60 M+VR GYVAMS + + SPS+TMT A F K++DREA +R+LE IA NL N LRLLKHN Sbjct: 1 MLVRLGYVAMSVHLKNASPSQTMTYAQFQKIDDREAAIRKLERIANSNLENCLRLLKHNK 60 Query: 61 GSDIRVYRLTSKLIPLATHPDLQDWNPFEALAADFAEAGSYVKKHGLRVSFHPDHFTVLS 120 G DI +RL+SKLIPLA H +L +WN L + G Y + +R+ FHPDHF VL+ Sbjct: 61 GHDISFFRLSSKLIPLANHEELLEWNYIRPLKENLKVLGDYAIRMNMRIDFHPDHFVVLN 120 Query: 121 TPRPEVLASSVRDLQHHVDMLNAMDLPATAKNNIHIGGAYGDKPAAAARFLEHFAELPLD 180 +P + SV+ LQ H +L M + + +H+GG Y DK A RF+E+++ +P Sbjct: 121 SPEENIFKQSVKTLQMHRKLLKGMGIEHKQRCVMHVGGGYKDKELALERFIENWSNVPRG 180 Query: 181 LQERTTLENDDKTFNAPETLEVSRRLGVPMVLDIHHQWVNNEGELPWELWPEIMKTWQTP 240 +QE LENDD TF +TL + +L +P+V D+HH +N++ E E W ++ TW++ Sbjct: 181 IQEMIMLENDDTTFTLEDTLYLGEKLDIPVVFDLHHHMMNHDREDWHEDWARVVHTWESS 240 Query: 241 LALKDVLPGETLPPKIHVXXXXXXXXXXXHADGVEPAPLLAFLKRIAADTPAVDAMIEAK 300 L LP K+H+ HAD + L+FLK+I P +D MIEAK Sbjct: 241 L----------LPVKMHISSPREGKDPRAHADFINVDTFLSFLKKIKGSVPQIDCMIEAK 290 Query: 301 AKDGALFGLMEALKELAEAGNGITVLDGASVNIE 334 KD +LF LM L E + + ++DGAS I+ Sbjct: 291 KKDESLFQLMRDLSEQTD----VEIVDGASFYIK 320 >ref|NP_654178.1| AP2Ec, AP endonuclease family 2 [Bacillus anthracis A2012] ref|NP_842801.1| UV-endonuclease, putative [Bacillus anthracis str. Ames] gb|AAP24287.1| UV-endonuclease, putative [Bacillus anthracis str. Ames] Length = 320 Score = 278 bits (712), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/334 (41%), Positives = 197/334 (58%), Gaps = 14/334 (4%) Query: 1 MIVRFGYVAMSTVIPDCSPSKTMTMASFNKLNDREAGLRRLEAIARGNLHNTLRLLKHNV 60 M+VR G+VAMS + + SPS+TMT A F K++DREA +R+LE IA NL N LRLLKHN Sbjct: 1 MLVRLGHVAMSVHLKNASPSQTMTYAQFQKIDDREAAIRKLERIANSNLENCLRLLKHNK 60 Query: 61 GSDIRVYRLTSKLIPLATHPDLQDWNPFEALAADFAEAGSYVKKHGLRVSFHPDHFTVLS 120 G DI +RL+SKLIPLA H +L +WN L + G Y + +R+ FHPDHF VL+ Sbjct: 61 GHDISFFRLSSKLIPLANHEELLEWNYIRPLKENLKVLGDYAIRMNMRIDFHPDHFVVLN 120 Query: 121 TPRPEVLASSVRDLQHHVDMLNAMDLPATAKNNIHIGGAYGDKPAAAARFLEHFAELPLD 180 +P + SV+ LQ H +L M + + +H+GG Y DK A RF+E+++ +P Sbjct: 121 SPEENIFKQSVKTLQMHRKLLKGMGIEHKQRCVMHVGGGYKDKELALERFIENWSNVPRG 180 Query: 181 LQERTTLENDDKTFNAPETLEVSRRLGVPMVLDIHHQWVNNEGELPWELWPEIMKTWQTP 240 +QE LENDD TF +TL + +L +P+V D+HH +N++ E E W ++ TW++ Sbjct: 181 IQEMIMLENDDTTFTLEDTLYLGEKLDIPVVFDLHHHMMNHDREDWHEDWARVVHTWESS 240 Query: 241 LALKDVLPGETLPPKIHVXXXXXXXXXXXHADGVEPAPLLAFLKRIAADTPAVDAMIEAK 300 L LP K+H+ HAD ++ L+FLK+I P +D MIEAK Sbjct: 241 L----------LPVKMHISSPREGKDPRAHADFIDVDTFLSFLKKIKGSVPQIDCMIEAK 290 Query: 301 AKDGALFGLMEALKELAEAGNGITVLDGASVNIE 334 KD +LF LM L E + + ++DGAS I+ Sbjct: 291 MKDESLFQLMRDLSEQTD----VEIIDGASFYIK 320 >ref|ZP_00062121.1| COG4294: UV damage repair endonuclease [Clostridium thermocellum ATCC 27405] Length = 321 Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 131/315 (41%), Positives = 178/315 (56%), Gaps = 11/315 (3%) Query: 1 MIVRFGYVAMSTVIPDCSPSKTMTMASFNKLNDREAGLRRLEAIARGNLHNTLRLLKHNV 60 M+VR GYVAM+ + D SPS T+T+ + LN+ E L +L + NLHNTLR+L++N Sbjct: 1 MLVRLGYVAMTMNLKDSSPSGTVTVKTLAGLNEDETRLNKLRKVTAANLHNTLRILRYNK 60 Query: 61 GSDIRVYRLTSKLIPLATHPDLQDWNPFEALAADFAEAGSYVKKHGLRVSFHPDHFTVLS 120 +I VYR TSKL+PLATHP + W+ +F G +VK++ RVS HPDH+T+L+ Sbjct: 61 AYNISVYRFTSKLVPLATHPMVSHWDYVGEFRNEFKSLGDFVKENNFRVSAHPDHYTLLN 120 Query: 121 TPRPEVLASSVRDLQHHVDMLNAMDLP-ATAKNNIHIGGAYGDKPAAAARFLEHFAELPL 179 +P EV +SVRDL +HV + AM L K +HIGG Y +K + RF E++A LP Sbjct: 121 SPSKEVFEASVRDLDYHVKLFEAMGLEDYKYKLVMHIGGLYKNKQTSVERFKENYAILPD 180 Query: 180 DLQERTTLENDDKTFNAPETLEVSRRLGVPMVLDIHHQWVNNEGELPWELWPEIMKTWQT 239 +++R ENDDK + A + L++ + L VPMVLD+HH N GE ++ EI TW+ Sbjct: 181 RIRKRLIFENDDKIYTARDVLDICKELKVPMVLDVHHHNCVNNGERLEDMLKEIFDTWK- 239 Query: 240 PLALKDVLPGETLPPKIHVXXXXXXXXXXXHADGVEPAPLLAFLKRIAADTPAVDAMIEA 299 E PPKIH HAD ++ FL+ D MIEA Sbjct: 240 ---------DEYFPPKIHFSTPKSKENFRSHADEIDVNEFYRFLQIAKKLKKDFDVMIEA 290 Query: 300 KAKDGALFGLMEALK 314 K KD ALF L LK Sbjct: 291 KNKDNALFKLSRELK 305 >ref|NP_243463.1| BH2597~unknown conserved protein [Bacillus halodurans] sp|Q9K9P8|UVSE_BACHD UV DNA damage endonuclease (UV-endonuclease) (UVED) pir||E83974 hypothetical protein BH2597 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06316.1| BH2597~unknown conserved protein [Bacillus halodurans] Length = 322 Score = 239 bits (611), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 134/338 (39%), Positives = 186/338 (55%), Gaps = 19/338 (5%) Query: 1 MIVRFGYVAMSTVIPDCSPSKTMTMASFNKLNDREAGLRRLEAIARGNLHNTLRLLKHNV 60 M ++FGYVAMS + + SPSKTMT F K+ D EAGLR+LE IA+ NLHN LRLLKHN+ Sbjct: 1 MRIQFGYVAMSMELANASPSKTMTATQFEKIEDHEAGLRKLERIAKTNLHNCLRLLKHNL 60 Query: 61 GSDIRVYRLTSKLIPLATHPDLQDWNPFEALAADFAEAGSYVKKHGLRVSFHPDHFTVLS 120 I +RL+SKL+PL HP + W A+A + G + +H +R+ FHPDHF VL+ Sbjct: 61 AYQISFFRLSSKLVPLVNHPLTEGWKYELAIAEELQAVGEFASEHQMRIDFHPDHFVVLN 120 Query: 121 TPRPEVLASSVRDLQHHVDMLNAMDLPATAKNNIHIGGAYGDKPAAAARFLEHFAELPLD 180 + E+ S++ L +H +L M++ + +H+GG A +F+E+ A +P Sbjct: 121 SEAKEITRRSLQTLLYHYKLLKGMEIDPRHRCVLHVGGKKKGVEAGLEQFIENTASIPKS 180 Query: 181 LQERTTLENDDKTFNAPETLEVSRRLGVPMVLDIHHQWVNNEGELPWELWPEIMKTWQTP 240 L LENDDK++ + L + +L +P+VLDIHH V + + E W I+ TW+ Sbjct: 181 LLSMIMLENDDKSYTIDDVLYLGEKLAIPVVLDIHHHDVLHRSKSLQETWQRIVATWE-- 238 Query: 241 LALKDVLPGETLPPKIHVXXXXXXXXXXXHADGVEPAPLLAFLKRIAADTPAVD---AMI 297 LP KIH+ H D + +AFL I AD AVD MI Sbjct: 239 --------DSPLPVKIHLSSPLSGEDDPRHHDYINADRFIAFLHEIGAD--AVDHLHVMI 288 Query: 298 EAKAKDGALFGLMEALKELAEAGNGITVLDGASVNIEP 335 EAK KD ALF LM+ L E E ITV+ ++V P Sbjct: 289 EAKKKDLALFQLMKDLAEYDE----ITVVSKSAVEFNP 322 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 492,966,981 Number of extensions: 20090472 Number of successful extensions: 52070 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 52008 Number of HSP's successfully gapped: 36 Length of query: 335 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 209 Effective length of database: 415,135,104 Effective search space: 86763236736 Effective search space used: 86763236736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)