BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0008.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242429.1| superoxide dismutase [Bacillus halodurans] >gi|... 306 5e-82 ref|NP_655372.1| sodfe_C, Iron/manganese superoxide dismutases, ... 303 4e-81 ref|NP_389815.1| superoxide dismutase [Bacillus subtilis] >gi|66... 300 3e-80 ref|NP_831247.1| Superoxide dismutase [Bacillus cereus ATCC 1457... 298 2e-79 ref|NP_780873.1| superoxide dismutase [Fe] [Clostridium tetani E... 258 1e-67 >ref|NP_242429.1| superoxide dismutase [Bacillus halodurans] pir||C83845 superoxide dismutase BH1563 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05282.1| superoxide dismutase [Bacillus halodurans] Length = 293 Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 142/219 (64%), Positives = 169/219 (77%), Gaps = 2/219 (0%) Query: 174 ASPLSGQQEPGTVPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENK 233 A +G + P VPIGGH LPPLPY Y ALEPYID + MR+HH KHHQSYV+GLNKAE + Sbjct: 77 AGGSNGMRRP--VPIGGHRLPPLPYPYEALEPYIDREIMRLHHQKHHQSYVEGLNKAEKE 134 Query: 234 LAEARKTKDFDLVKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSY 293 + AR+T F L+KHWERE AFNGAGHYLH+IFW VMSP GGG P G L IE FGS+ Sbjct: 135 MERARRTNHFQLIKHWEREAAFNGAGHYLHSIFWEVMSPHGGGEPKGELRRQIERDFGSF 194 Query: 294 DAFKEQFTEAANKVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAY 353 FK F++AA KVEG GWAILVW+PR+ RLEIL AE HQNLSQ D +PLL LDVWEHAY Sbjct: 195 ARFKNHFSQAAEKVEGVGWAILVWAPRAHRLEILQAEFHQNLSQQDAIPLLPLDVWEHAY 254 Query: 354 YLKHQNNRADYIKDWWKVVHWPYVSERFNAARKLVWQPF 392 YL+++N R DYI++WW VV+W V +R+NAA++L W P+ Sbjct: 255 YLQYKNERKDYIENWWNVVNWDAVEKRYNAAKQLRWTPY 293 >ref|NP_655372.1| sodfe_C, Iron/manganese superoxide dismutases, C-terminal domain [Bacillus anthracis A2012] ref|NP_843942.1| superoxide dismutase [Bacillus anthracis str. Ames] ref|NP_977914.1| superoxide dismutase [Bacillus cereus ATCC 10987] gb|AAP25428.1| superoxide dismutase [Bacillus anthracis str. Ames] gb|AAS40522.1| superoxide dismutase [Bacillus cereus ATCC 10987] Length = 304 Score = 303 bits (776), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 163/207 (78%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 VPIGGHTLPPLPY YNALEPYI + M +HHDKHH+SYV+GLNKAE + EARKT FDL Sbjct: 98 VPIGGHTLPPLPYPYNALEPYISREIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNQFDL 157 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 +KHWERE AF+G+GHYLHTIFWN M GGG P G L IE FGS+ F++ FTEAA+ Sbjct: 158 IKHWEREAAFHGSGHYLHTIFWNNMKKGGGGSPRGALSHRIEQDFGSFLRFQKHFTEAAS 217 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 KVEG GWAILVW PRS RLEIL + HQ +QWD +PLL LDVWEHAYYL++QN + +YI Sbjct: 218 KVEGSGWAILVWVPRSGRLEILQSTLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYI 277 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 K+WW VV+WP V +RF +A+++ W P+ Sbjct: 278 KNWWNVVNWPDVEKRFESAKQIEWTPY 304 >ref|NP_389815.1| superoxide dismutase [Bacillus subtilis] sp|O35023|SODF_BACSU Probable superoxide dismutase [Fe] pir||C69709 superoxide dismutase (EC 1.15.1.1) (Fe/Mn) sodF - Bacillus subtilis gb|AAB84442.1| superoxide dismutase [Bacillus subtilis] emb|CAB13825.1| superoxide dismutase [Bacillus subtilis subsp. subtilis str. 168] Length = 281 Score = 300 bits (769), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 137/207 (66%), Positives = 163/207 (78%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 VPIG H LP LPY Y+ALEPYI M +HH KHHQSYVDGLNKAE++L +AR TK++DL Sbjct: 75 VPIGKHVLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDL 134 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 + HWERELAF+GAGHYLH+IFW M P G RPTG L I+ SFGSY AFKE FT+A+ Sbjct: 135 ITHWERELAFHGAGHYLHSIFWFSMHPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASK 194 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 KVEG GWAILVW+PRS RLEILTAEKHQ SQWDV+PLL LDVWEHAYYL+++N+RA Y+ Sbjct: 195 KVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEHAYYLQYKNDRASYV 254 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 WW VV W +RF A+++VW+ + Sbjct: 255 DHWWNVVDWREAEKRFEQAKEVVWKLY 281 >ref|NP_831247.1| Superoxide dismutase [Bacillus cereus ATCC 14579] gb|AAP08448.1| Superoxide dismutase [Bacillus cereus ATCC 14579] Length = 225 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 133/207 (64%), Positives = 162/207 (78%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 VPIGGHTLPPLP+ YNAL+PYI ++ M +HHDKHH+SYV+GLNKAE + EARKT FDL Sbjct: 19 VPIGGHTLPPLPFPYNALDPYISKEIMMLHHDKHHRSYVEGLNKAEKMMEEARKTNKFDL 78 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 +KHWERE AF+G+GHYLHTIFWN M GGG P G IE FGS+ F++ FTEAA+ Sbjct: 79 IKHWEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGTFSQQIEQDFGSFLRFQKHFTEAAS 138 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 KVEG GWAILVW PRS RLEIL + HQ +QWD +PLL LDVWEHAYYL++QN + +YI Sbjct: 139 KVEGSGWAILVWVPRSGRLEILQSTLHQLFTQWDTIPLLVLDVWEHAYYLQYQNRKDEYI 198 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 K+WW VV+WP V +RF A+++ W P+ Sbjct: 199 KNWWNVVNWPDVEKRFETAKQIEWTPY 225 >ref|NP_780873.1| superoxide dismutase [Fe] [Clostridium tetani E88] gb|AAO34810.1| superoxide dismutase [Fe] [Clostridium tetani E88] Length = 198 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 119/195 (61%), Positives = 147/195 (75%), Gaps = 1/195 (0%) Query: 190 GHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDLVKHW 249 HTLP LPYAYNALEP+ DE T+RIHHD HH++YVDGLN AENK+ E R+T D+ L+KH+ Sbjct: 2 AHTLPALPYAYNALEPHYDEATLRIHHDIHHKTYVDGLNNAENKIEECRRTGDYTLIKHY 61 Query: 250 ERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAANKVEG 309 ERELAF+G+GH LHT+FW M P GG +P +L+ I F Y+ FK++F+ AA VEG Sbjct: 62 ERELAFHGSGHILHTLFWENMMP-GGSQPKDEILNQINKDFTDYETFKKEFSAAAVAVEG 120 Query: 310 GGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYIKDWW 369 GWAIL W+ +L ILTAEKHQ+L+QW V PLL LDVWEHAYYLK+QN RA +I WW Sbjct: 121 SGWAILCWNCMFNKLVILTAEKHQDLTQWGVKPLLILDVWEHAYYLKYQNKRAAFIDAWW 180 Query: 370 KVVHWPYVSERFNAA 384 +V+W V+ERF A Sbjct: 181 NIVNWDVVNERFKQA 195 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 606,744,073 Number of extensions: 25803208 Number of successful extensions: 73387 Number of sequences better than 1.0e-05: 1209 Number of HSP's gapped: 71552 Number of HSP's successfully gapped: 1209 Length of query: 392 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 264 Effective length of database: 409,704,906 Effective search space: 108162095184 Effective search space used: 108162095184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)