BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0002.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242275.1| superoxide dismutase [Bacillus halodurans] >gi|... 298 4e-80 sp|P00449|SODM_BACST Superoxide dismutase [Mn] >gi|1070456|pir||... 290 2e-77 sp|P28760|SODM_BACCA Superoxide dismutase [Mn] >gi|98098|pir||S2... 289 2e-77 prf||1918164A superoxide dismutase 285 4e-76 dbj|BAA95631.1| superoxide dismutase [Geobacillus thermoleovorans] 285 4e-76 >ref|NP_242275.1| superoxide dismutase [Bacillus halodurans] sp|Q9KD10|SODM_BACHD Superoxide dismutase [Mn] pir||A83826 superoxide dismutase sodA [imported] - Bacillus halodurans (strain C-125) dbj|BAB05128.1| superoxide dismutase [Bacillus halodurans] Length = 202 Score = 298 bits (764), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 142/202 (70%), Positives = 157/202 (77%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MAF+LP LPYP NALEPHID TM IHH +HHNTYVT LNAALE L KSIE L++D Sbjct: 1 MAFELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSD 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L+AVPE IRTAVRNNGGGHANHTLFW+++ I++E G FD+FKE FA Sbjct: 61 LDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFA 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA RFGSGWAWLVV DGKL +TSTPNQD P+ EG TPILGLDVWEHAYYLNYQN+RPD Sbjct: 121 DAAANRFGSGWAWLVVNDGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPD 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNW+EV KRY AK Sbjct: 181 YISAFWNVVNWDEVAKRYNEAK 202 >sp|P00449|SODM_BACST Superoxide dismutase [Mn] pir||DSBSNF superoxide dismutase (EC 1.15.1.1) (Mn) - Bacillus stearothermophilus gb|AAA22600.1| manganese superoxide dismutase (EC 1.15.1.1) gb|AAA22765.1| Mn-superoxide dismutase gb|AAA22767.1| Mn-superoxide dismutase Length = 204 Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 159/202 (78%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M F+LPALPYP +ALEPHID TM IHH +HHNTYVTNLNAALE P+LQ KS+EELL++ Sbjct: 1 MPFELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L A+PE+IRTAVRNNGGGHANH+LFW ++ I+ + G F FK++F+ Sbjct: 61 LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFS 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA RFGSGWAWLVV +G+L +TSTPNQD+PI EG TPILGLDVWEHAYYL YQN+RP+ Sbjct: 121 KAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPE 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNW+EV KRY AK Sbjct: 181 YIAAFWNVVNWDEVAKRYSEAK 202 >sp|P28760|SODM_BACCA Superoxide dismutase [Mn] pir||S22053 superoxide dismutase (EC 1.15.1.1) (Mn) - Bacillus caldotenax emb|CAA44556.1| Manganese superoxide dismutase [Bacillus caldotenax] gb|AAF64074.1| superoxide dismutase [Geobacillus thermoleovorans] prf||1905285A superoxide dismutase Length = 204 Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 134/202 (66%), Positives = 159/202 (78%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M F+LPALPYP +ALEPHID TM IHH +HHNTYVTNLNAALE P+LQ KS+EELL++ Sbjct: 1 MPFELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L A+PE+IRTAVRNNGGGHANH+LFW ++ I+ + G F FK++F+ Sbjct: 61 LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFS 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA RFGSGWAWLVV +G+L +TSTPNQD+PI EG TPILGLDVWEHAYYL YQN+RP+ Sbjct: 121 KAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPE 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWN+VNW+EV KRY AK Sbjct: 181 YIAAFWNIVNWDEVAKRYSEAK 202 >prf||1918164A superoxide dismutase Length = 205 Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 135/203 (66%), Positives = 159/203 (78%), Gaps = 1/203 (0%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M F+LPALPYP +ALEPHID TM IHH +HHNTYVTNLNAALE P+LQ KS+EELL++ Sbjct: 1 MPFELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L A+PE+IRTAVRNNGGGHANH+LFW ++ I+ + G F FK++F+ Sbjct: 61 LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELADAINKKFGSFTAFKDEFS 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDN-PISEGATPILGLDVWEHAYYLNYQNKRP 179 AA RFGSGWAWLVV +G+L +TSTPNQD+ PI EG TPILGLDVWEHAYYL YQN+RP Sbjct: 121 KAAAGRFGSGWAWLVVNNGELEITSTPNQDSPPIMEGKTPILGLDVWEHAYYLKYQNRRP 180 Query: 180 DYIKAFWNVVNWEEVGKRYESAK 202 +YI AFWNVVNW+EV KRY AK Sbjct: 181 EYIAAFWNVVNWDEVAKRYSEAK 203 >dbj|BAA95631.1| superoxide dismutase [Geobacillus thermoleovorans] Length = 204 Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 132/202 (65%), Positives = 157/202 (77%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M F+LPALPYP +ALEPHID TM IHH +HHNTYVTNLNAALE P+LQ KS+EELL++ Sbjct: 1 MPFELPALPYPYDALEPHIDKETMNIHHTKHHNTYVTNLNAALEGHPDLQNKSLEELLSN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L A+PE+IRTAVRNNGGGHANH+LFW ++ I+ + G F FK++F+ Sbjct: 61 LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFS 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA RF GWAWLVV +G+L +TSTPNQD+PI EG TPILGLDVWEHAYYL YQN+RP+ Sbjct: 121 KAAAGRFSPGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPE 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWN+VNW+EV KRY AK Sbjct: 181 YIAAFWNIVNWDEVAKRYSEAK 202 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 311,938,419 Number of extensions: 11862354 Number of successful extensions: 31857 Number of sequences better than 1.0e-05: 1230 Number of HSP's gapped: 29070 Number of HSP's successfully gapped: 1231 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)