BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0017.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349997.1| Acyl-CoA thioesterase 1 [Clostridium acetobutyl... 97 2e-19 gb|AAH12683.1| Bile acid-Coenzyme A: amino acid N-acyltransferas... 69 4e-11 gb|AAK21494.2| Hypothetical protein W03D8.8 [Caenorhabditis eleg... 69 5e-11 ref|NP_491047.1| acyl-CoA thioesterase family member (1D363) [Ca... 68 7e-11 emb|CAE67026.1| Hypothetical protein CBG12427 [Caenorhabditis br... 68 8e-11 >ref|NP_349997.1| Acyl-CoA thioesterase 1 [Clostridium acetobutylicum] pir||F97318 acyl-CoA thioesterase 1 [imported] - Clostridium acetobutylicum gb|AAK81337.1| Acyl-CoA thioesterase 1 [Clostridium acetobutylicum] Length = 431 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 8/174 (4%) Query: 5 WCSGDEFSSYAVFVADETGKVDFDLAKPVEGSYETANSMGLIYSLKQSTSTGKNIAENIS 64 W F S+AVF AD+ G VD P++GSY +SMGL +S+ + + +++S Sbjct: 56 WVKKTNFESFAVFKADDKGTVDLSKDAPIKGSYTRVDSMGLFWSMVSTQQQDYTLKKSLS 115 Query: 65 IEKPII--MHLLFESSIERKEV---QLKRLFKAEDILVKQINES-FTGQLFYQKNTN-NK 117 P + M ++ + + KE+ + K+LF + D+ + + E+ G+ F KN+ K Sbjct: 116 -SCPFLTSMEVILKVEVCGKELVSSKCKKLFVSSDVKCQYVTENNLVGKYFTNKNSKIKK 174 Query: 118 TVLMVGGSDGQMQSLALMAGPLASRGFNVLITSYFASKGLPEKLEEVPLEYFEK 171 ++++ GS+G + + + +A LAS G+ L +YF LP L E+PLEYFEK Sbjct: 175 GIIVLSGSEGGIHNASQIAALLASHGYPSLALAYFGMDTLPATLNEIPLEYFEK 228 >gb|AAH12683.1| Bile acid-Coenzyme A: amino acid N-acyltransferase [Mus musculus] Length = 420 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 17/177 (9%) Query: 8 GDEFSSYAVFVADETGKVDFDLAKPVEGSYETANSMGLIYSLKQSTSTGKNIAENISIEK 67 G+ FSS A + A E G+VD + + G Y + MGL +SLK G+ I ++ + Sbjct: 41 GNLFSSQAFYRASEVGEVDLEHDPSLGGDYMGVHPMGLFWSLKPEKLLGRLIKRDV-MNS 99 Query: 68 PIIMHLL----------FESSIERKEVQLKRLFKAEDILVKQINES-FTGQLFYQKNTNN 116 P +H+ S + L+R + A + Q+ ES G LF Sbjct: 100 PYQIHIKACHPYFPLQDIVVSPPLDSLTLERWYVAPGVKRIQVKESRIRGALFLPPGEGP 159 Query: 117 --KTVLMVGGSDGQMQSLALMAGPLASRGFNVLITSYFASKGLPEKLEEVPLEYFEK 171 + + GG+ G M+ A + LASRGF L +Y+ LP +LE+V LEYFE+ Sbjct: 160 FPGVIDLFGGAGGLMEFRASL---LASRGFATLALAYWNYDDLPSRLEKVDLEYFEE 213 >gb|AAK21494.2| Hypothetical protein W03D8.8 [Caenorhabditis elegans] Length = 430 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 13 SYAVFVADETGKVDFDLAKPVEGSYETANSMGLIYSLK--QSTSTGKNIAENISIEKPII 70 S A F AD G++D AKP+ GSY A+ MGL +K + + G + + + Sbjct: 44 SEATFQADPAGRIDLKYAKPLRGSYYDADPMGLFLGMKPCEDFAYGGYLRCTPPVPFYYL 103 Query: 71 MHLLFESSIERKEVQLKRLFKAEDILVKQINESFTGQLFYQKNTNN-KTVLMVGGSDGQM 129 + L S +K+ + ++ ++ E F LF VL + G+ G + Sbjct: 104 LELFDSSGTLIDSTYIKKHWMHPKLIRTELEEDFCATLFKPPGDGPFPVVLDISGTGGGI 163 Query: 130 QSLALMAGPLASRGFNVLITSYFASKGLPEKLEEVPLEYFEK 171 LAS GF VL ++F K LP+K+E+V +EYF K Sbjct: 164 HEHK--GAMLASEGFVVLCLAFFQFKYLPQKMEDVDMEYFAK 203 >ref|NP_491047.1| acyl-CoA thioesterase family member (1D363) [Caenorhabditis elegans] pir||T32937 hypothetical protein W03D8.8 - Caenorhabditis elegans Length = 468 Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 9/164 (5%) Query: 13 SYAVFVADETGKVDFDLAKPVEGSYETANSMGLIYSLKQSTSTGKNIAENISIEKPIIMH 72 S A F AD G++D AKP+ GSY A+ MGL +K + P+ + Sbjct: 44 SEATFQADPAGRIDLKYAKPLRGSYYDADPMGLFLGMKPCEDFA--YGGYLRCTPPVPFY 101 Query: 73 LLFE----SSIERKEVQLKRLFKAEDILVKQINESFTGQLFYQKNTNN-KTVLMVGGSDG 127 L E S +K+ + ++ ++ E F LF VL + G+ G Sbjct: 102 YLLELFDSSGTLIDSTYIKKHWMHPKLIRTELEEDFCATLFKPPGDGPFPVVLDISGTGG 161 Query: 128 QMQSLALMAGPLASRGFNVLITSYFASKGLPEKLEEVPLEYFEK 171 + LAS GF VL ++F K LP+K+E+V +EYF K Sbjct: 162 GIHEHK--GAMLASEGFVVLCLAFFQFKYLPQKMEDVDMEYFAK 203 >emb|CAE67026.1| Hypothetical protein CBG12427 [Caenorhabditis briggsae] Length = 435 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 12 SSYAVFVADETGKVDFDLAKPVEGSYETANSMGLIYSLKQSTSTGKNIAENISIEKPIIM 71 +SY V ADE G +D AKP+ G+Y A+ MGL S+ + P Sbjct: 48 ASYCVLKADENGNIDMKTAKPLRGTYFEADGMGLFLSMTPCEDFAYGGYLRCTPPIPFFY 107 Query: 72 HLLF--ESSIERKEVQLKRLFKAEDILVKQI-NESFTGQLFYQKNTNNKTVLM-VGGSDG 127 L+ ES + E+ +K+ + + +I ++ F G LF +M + G+ G Sbjct: 108 LLILSDESGTKLDEMYIKKHWMHPLLTRTEIEHDGFCGTLFKPPGDGPFPCVMDISGTGG 167 Query: 128 QMQSLALMAGPLASRGFNVLITSYFASKGLPEKLEEVPLEYFEK 171 + LAS GF V+ ++F K LP K+E+V +EYF K Sbjct: 168 GLHEHK--GAMLASEGFVVICVAFFQFKDLPYKMEDVDVEYFLK 209 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 249,173,094 Number of extensions: 9293464 Number of successful extensions: 27957 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 27942 Number of HSP's successfully gapped: 22 Length of query: 181 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 63 Effective length of database: 436,855,896 Effective search space: 27521921448 Effective search space used: 27521921448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)