BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0010.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_976654.1| phosphoribosylglycinamide formyltransferase [Ba... 203 2e-51 ref|NP_654229.1| formyl_transf, Formyl transferase [Bacillus ant... 201 1e-50 ref|NP_830171.1| Phosphoribosylglycinamide formyltransferase [Ba... 199 2e-50 ref|NP_241498.1| phosphoribosylglycinamide formyltransferase [Ba... 196 4e-49 ref|NP_815480.1| phosphoribosylglycinamide formyltransferase [En... 193 2e-48 >ref|NP_976654.1| phosphoribosylglycinamide formyltransferase [Bacillus cereus ATCC 10987] gb|AAS39262.1| phosphoribosylglycinamide formyltransferase [Bacillus cereus ATCC 10987] Length = 195 Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/192 (52%), Positives = 129/192 (67%), Gaps = 1/192 (0%) Query: 3 WSRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRP 62 SR+AVFASG GSNF +L A +LG I LLV D+PEA RA IP Sbjct: 1 MSRLAVFASGSGSNFQSLVNAVEEKRLGA-EISLLVCDKPEARAVGRAHYHHIPCFAFSA 59 Query: 63 KDFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGK 122 K + S+E +E EI+ +L+ +I ++LAGYMRLI P LL Y GR +NIHPSLLP+F GK Sbjct: 60 KAYESKEAFEKEILKKLEEYEIDYVILAGYMRLIGPTLLEAYGGRIINIHPSLLPSFPGK 119 Query: 123 DAIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYP 182 DA+ QAL+ GVK+TGVT+H+VD GMDTGP+IAQ +V V GDT ESL ++I QVE++LY Sbjct: 120 DAVGQALEAGVKVTGVTIHYVDAGMDTGPIIAQEAVVVSEGDTRESLQKKIQQVEHKLYV 179 Query: 183 EVVRALAEGKVE 194 V + + E Sbjct: 180 NTVNQIVQSTKE 191 >ref|NP_654229.1| formyl_transf, Formyl transferase [Bacillus anthracis A2012] ref|NP_842847.1| phosphoribosylglycinamide formyltransferase [Bacillus anthracis str. Ames] gb|AAP24333.1| phosphoribosylglycinamide formyltransferase [Bacillus anthracis str. Ames] Length = 195 Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/192 (52%), Positives = 128/192 (66%), Gaps = 1/192 (0%) Query: 3 WSRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRP 62 SR+AVFASG GSNF +L A +L I LLV D+PEA RA IP Sbjct: 1 MSRLAVFASGSGSNFQSLVNAVEEKRLDA-EISLLVCDKPEARAVGRANYHHIPCFAFSA 59 Query: 63 KDFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGK 122 K + S+E +E EI+ +L+ +I ++LAGYMRLI P LL Y GR +NIHPSLLP+F GK Sbjct: 60 KAYESKEAFEKEILNKLEEYEIDYVILAGYMRLIGPTLLEAYGGRIINIHPSLLPSFPGK 119 Query: 123 DAIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYP 182 DA+ QAL+ GVK+TGVT+H+VD GMDTGP+IAQ +V V GDT ESL ++I QVE++LY Sbjct: 120 DAVGQALEAGVKVTGVTIHYVDAGMDTGPIIAQEAVVVSEGDTRESLQKKIQQVEHKLYV 179 Query: 183 EVVRALAEGKVE 194 V + + E Sbjct: 180 NTVNQIVQSTKE 191 >ref|NP_830171.1| Phosphoribosylglycinamide formyltransferase [Bacillus cereus ATCC 14579] gb|AAP07372.1| Phosphoribosylglycinamide formyltransferase [Bacillus cereus ATCC 14579] Length = 195 Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/188 (52%), Positives = 127/188 (67%), Gaps = 1/188 (0%) Query: 3 WSRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRP 62 SR+AVFASG GSNF +L A +L I LLV D+PEA RA IP Sbjct: 1 MSRLAVFASGSGSNFQSLVNAVEEKRLDA-EISLLVCDKPEARAVGRANYHHIPCFAFSA 59 Query: 63 KDFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGK 122 K + S+E +E EI+ +L+ +I ++LAGYMRLI P LL Y G+ +NIHPSLLP+F GK Sbjct: 60 KAYESKEAFEKEILKKLEEYEIDYVILAGYMRLIGPTLLEAYGGKIINIHPSLLPSFPGK 119 Query: 123 DAIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYP 182 DA+ QAL+ GVK+TGVT+H+VD GMDTGP+IAQ +V V GDT ESL ++I QVE++LY Sbjct: 120 DAVGQALEAGVKVTGVTIHYVDAGMDTGPIIAQEAVVVSEGDTRESLQKKIQQVEHKLYV 179 Query: 183 EVVRALAE 190 V + + Sbjct: 180 NTVNQIVQ 187 >ref|NP_241498.1| phosphoribosylglycinamide formyltransferase [Bacillus halodurans] pir||H83728 phosphoribosylglycinamide formyltransferase purN [imported] - Bacillus halodurans (strain C-125) dbj|BAB04351.1| phosphoribosylglycinamide formyltransferase [Bacillus halodurans] Length = 188 Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%) Query: 3 WSRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRP 62 R+A+FASG G+N A+ ++++AGQL + LL++D+P A V +R + IP L P Sbjct: 1 MKRVAIFASGSGTNAEAIIQSQKAGQLPC-EVALLITDKPGAKVVERVKVHEIPVCALDP 59 Query: 63 KDFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGK 122 K + S+E YE E+V +L+ + I +VLAGYMRL+ P LL Y GR VNIHPSLLPAF G Sbjct: 60 KTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGL 119 Query: 123 DAIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYP 182 AI+QA+ VK+TGVT+H+VD GMDTGP+IAQ +V++E DT+E+L +I VE+ LYP Sbjct: 120 HAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYP 179 Query: 183 EVVRAL 188 + L Sbjct: 180 ATLHKL 185 >ref|NP_815480.1| phosphoribosylglycinamide formyltransferase [Enterococcus faecalis V583] gb|AAO81550.1| phosphoribosylglycinamide formyltransferase [Enterococcus faecalis V583] Length = 190 Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/186 (47%), Positives = 128/186 (68%), Gaps = 1/186 (0%) Query: 5 RIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRPKD 64 +IAVFASG GSNF A+A A ++ G + L+ D+PEA V RA++ IP + P D Sbjct: 2 KIAVFASGNGSNFEAIAAAFSQKKIAG-HLSLVFCDQPEAYVLTRAQKRKIPVVCFSPSD 60 Query: 65 FASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGKDA 124 F+SR YE +++ L+ I LIVLAGY+R+I LL Y R VNIHPSLLP+F G Sbjct: 61 FSSRGQYEEQVLKHLKEHQIDLIVLAGYLRIIGKTLLEAYPKRIVNIHPSLLPSFPGLHG 120 Query: 125 IDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYPEV 184 I++A YGVK+TG+T+H+VD G+DTGP+I Q + ++ DTV++LAE+IH +E+E YP++ Sbjct: 121 IEEAFHYGVKITGITIHYVDSGVDTGPIIFQTTTKIDTEDTVDTLAEKIHALEHEWYPKI 180 Query: 185 VRALAE 190 + + + Sbjct: 181 ISQIVK 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,249,849 Number of extensions: 11603424 Number of successful extensions: 34559 Number of sequences better than 1.0e-05: 1009 Number of HSP's gapped: 34219 Number of HSP's successfully gapped: 1009 Length of query: 204 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 84 Effective length of database: 431,425,698 Effective search space: 36239758632 Effective search space used: 36239758632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)