BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0005.p (81 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_654224.1| UPF0062, Uncharacterized ACR, YexA/UPF0062 fami... 108 4e-23 ref|NP_830166.1| Phosphorybosylformylglycinamidine synthetase, P... 108 4e-23 ref|NP_976649.1| phosphoribosylformylglycinamidine synthase, Pur... 107 6e-23 ref|NP_388528.1| similar to hypothetical proteins [Bacillus subt... 107 1e-22 ref|NP_241493.1| BH0627~unknown conserved protein [Bacillus halo... 103 2e-21 >ref|NP_654224.1| UPF0062, Uncharacterized ACR, YexA/UPF0062 family [Bacillus anthracis A2012] ref|NP_842842.1| phosphoribosylformylglycinamidine synthase, PurS protein [Bacillus anthracis str. Ames] gb|AAP24328.1| phosphoribosylformylglycinamidine synthase, PurS protein [Bacillus anthracis str. Ames] Length = 84 Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 50/81 (61%), Positives = 68/81 (83%), Gaps = 1/81 (1%) Query: 1 MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60 M K VYVT+++SVLDPQG AV+GALHS+ F EV+ +RIGKYMELT+D + ++ + ++K Sbjct: 1 MYKVKVYVTLRESVLDPQGTAVKGALHSLSFTEVQDVRIGKYMELTIDK-SVSDLDAKVK 59 Query: 61 EMCEKLLANTVIEDYRYELED 81 EMCEKLLAN V+ED+RYE+E+ Sbjct: 60 EMCEKLLANVVMEDFRYEVEE 80 >ref|NP_830166.1| Phosphorybosylformylglycinamidine synthetase, PurS component [Bacillus cereus ATCC 14579] gb|AAP07367.1| Phosphorybosylformylglycinamidine synthetase, PurS component [Bacillus cereus ATCC 14579] Length = 84 Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 50/81 (61%), Positives = 68/81 (83%), Gaps = 1/81 (1%) Query: 1 MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60 M K VYVT+++SVLDPQG AV+GALHS+ F EV+ +RIGKYMELT+D + ++ + ++K Sbjct: 1 MYKVKVYVTLRESVLDPQGTAVKGALHSLSFTEVQDVRIGKYMELTIDK-SVSDLDSKVK 59 Query: 61 EMCEKLLANTVIEDYRYELED 81 EMCEKLLAN V+ED+RYE+E+ Sbjct: 60 EMCEKLLANVVMEDFRYEVEE 80 >ref|NP_976649.1| phosphoribosylformylglycinamidine synthase, PurS protein [Bacillus cereus ATCC 10987] gb|AAS39257.1| phosphoribosylformylglycinamidine synthase, PurS protein [Bacillus cereus ATCC 10987] Length = 84 Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 50/81 (61%), Positives = 67/81 (82%), Gaps = 1/81 (1%) Query: 1 MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60 M K VYVT+++SVLDPQG AV+GALHS+ F EV+ +RIGKYMELT+D + + + ++K Sbjct: 1 MYKVKVYVTLRESVLDPQGTAVKGALHSLSFTEVQDVRIGKYMELTIDK-SVTDLDSKVK 59 Query: 61 EMCEKLLANTVIEDYRYELED 81 EMCEKLLAN V+ED+RYE+E+ Sbjct: 60 EMCEKLLANVVMEDFRYEVEE 80 >ref|NP_388528.1| similar to hypothetical proteins [Bacillus subtilis] sp|P12049|YEXA_BACSU Hypothetical protein yexA pir||E29326 conserved hypothetical protein yexA - Bacillus subtilis emb|CAB12466.1| purS [Bacillus subtilis subsp. subtilis str. 168] Length = 84 Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/81 (64%), Positives = 67/81 (82%), Gaps = 1/81 (1%) Query: 1 MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60 M K VYV++K+SVLDPQG AVQ ALHS+ + EV+ +RIGKYMELT++ +R + + +K Sbjct: 1 MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDR-DLDVLVK 59 Query: 61 EMCEKLLANTVIEDYRYELED 81 EMCEKLLANTVIEDYRYE+E+ Sbjct: 60 EMCEKLLANTVIEDYRYEVEE 80 >ref|NP_241493.1| BH0627~unknown conserved protein [Bacillus halodurans] pir||C83728 hypothetical protein BH0627 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04346.1| BH0627~unknown conserved protein [Bacillus halodurans] Length = 84 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/81 (61%), Positives = 64/81 (79%), Gaps = 1/81 (1%) Query: 1 MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60 M K VYVT+K+SVLDPQG AVQ +LH++ F EV +RIGKYMELTL+ + + R+ Sbjct: 1 MYKVKVYVTLKESVLDPQGSAVQKSLHALSFTEVNEVRIGKYMELTLEK-GEGDLDERIH 59 Query: 61 EMCEKLLANTVIEDYRYELED 81 +MC+KLLANTVIEDYRYE+E+ Sbjct: 60 DMCQKLLANTVIEDYRYEVEE 80 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 103,678,361 Number of extensions: 3240998 Number of successful extensions: 6894 Number of sequences better than 1.0e-05: 281 Number of HSP's gapped: 6864 Number of HSP's successfully gapped: 281 Length of query: 81 Length of database: 757,237,578 Length adjustment: 51 Effective length of query: 30 Effective length of database: 618,767,529 Effective search space: 18563025870 Effective search space used: 18563025870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)