BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0005.p
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_843322.1| cotJB protein [Bacillus anthracis str. Ames] >g...   105   5e-22
ref|NP_654750.1| hypothetical protein predicted by GeneMark [Bac...   104   6e-22
ref|NP_388571.1| cotJB [Bacillus subtilis] >gi|2833395|sp|Q45537...    96   3e-19
ref|NP_977219.1| cotJB protein [Bacillus cereus ATCC 10987] >gi|...    94   1e-18
ref|NP_623388.1| spore coat peptide assembly protein cotJB [Ther...    80   1e-14

>ref|NP_843322.1| cotJB protein [Bacillus anthracis str. Ames]
 gb|AAP24808.1| cotJB protein [Bacillus anthracis str. Ames]
          Length = 91

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 57/79 (72%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YY +LE LQ LDF LVEL LYL+THP+D  AI QFN  + +R  L  Q +E YGPLQ +G
Sbjct: 13 YYRLLENLQELDFVLVELTLYLDTHPDDTAAINQFNDFSYKRRVLKQQMEEKYGPLQQYG 72

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PWEW++ PWPWQ+
Sbjct: 73 NSYSNAPWEWSKGPWPWQI 91


>ref|NP_654750.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_830612.1| CotJB protein [Bacillus cereus ATCC 14579]
 gb|AAP07813.1| CotJB protein [Bacillus cereus ATCC 14579]
          Length = 87

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 57/79 (72%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YY +LE LQ LDF LVEL LYL+THP+D  AI QFN  + +R  L  Q +E YGPLQ +G
Sbjct: 9  YYRLLENLQELDFVLVELTLYLDTHPDDTAAINQFNDFSYKRRVLKQQMEEKYGPLQQYG 68

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PWEW++ PWPWQ+
Sbjct: 69 NSYSNAPWEWSKGPWPWQI 87


>ref|NP_388571.1| cotJB [Bacillus subtilis]
 sp|Q45537|CTJB_BACSU CotJB protein
 pir||G69605 spore coat peptide assembly protein cotJB - Bacillus subtilis
 gb|AAB17589.1| putative
 emb|CAB12509.1| cotJB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 100

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 54/86 (62%)

Query: 3   ANACEPRYYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELY 62
           A   +  YY  LEQ+Q  DF LVEL+LYLNTHP D  A++QFNQ +     L  QF+  Y
Sbjct: 15  AKKVDAEYYRQLEQIQAADFVLVELSLYLNTHPHDEDALKQFNQYSGYSRHLKRQFESSY 74

Query: 63  GPLQSFGRAYSKCPWEWNQTPWPWQV 88
           GPL  FG + +   W+W + PWPWQV
Sbjct: 75  GPLLQFGNSPAGKDWDWGKGPWPWQV 100


>ref|NP_977219.1| cotJB protein [Bacillus cereus ATCC 10987]
 gb|AAS39827.1| cotJB protein [Bacillus cereus ATCC 10987]
          Length = 91

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 21 DFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFGRAYSKCPWEWN 80
          DF LVEL LYL+THP+D  AI QFN+ + +R  L  + +E YGPLQ FG +YS  PWEW+
Sbjct: 24 DFVLVELTLYLDTHPDDTAAINQFNEFSYKRRVLKQKMEEKYGPLQQFGNSYSNAPWEWS 83

Query: 81 QTPWPWQV 88
          + PWPWQ+
Sbjct: 84 KGPWPWQI 91


>ref|NP_623388.1| spore coat peptide assembly protein cotJB [Thermoanaerobacter
          tengcongensis]
 gb|AAM24992.1| spore coat peptide assembly protein cotJB [Thermoanaerobacter
          tengcongensis]
          Length = 85

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 53/77 (68%)

Query: 12 EMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFGRA 71
          ++L+++  L+FA  +LNLYL+THPED +A++ +N  + +   L  Q+ + YGPL  FG  
Sbjct: 7  DLLKKIMELEFACQDLNLYLDTHPEDQKALQDYNYYSGQLAMLKQQYSQYYGPLMVFGHC 66

Query: 72 YSKCPWEWNQTPWPWQV 88
           S+ PW+W + PWPW++
Sbjct: 67 QSQYPWKWVEDPWPWEI 83


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.133    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 127,500,535
Number of extensions: 4097402
Number of successful extensions: 12298
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12296
Number of HSP's successfully gapped: 8
Length of query: 88
Length of database: 757,237,578
Length adjustment: 57
Effective length of query: 31
Effective length of database: 602,476,935
Effective search space: 18676784985
Effective search space used: 18676784985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)