BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0438.0005.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00044154.1| COG0583: Transcriptional regulator [Magnetoco... 215 1e-54 ref|ZP_00099932.1| COG0583: Transcriptional regulator [Desulfito... 197 2e-49 ref|NP_848967.1| lysR-like transcriptional regulator [Cyanidiosc... 190 3e-47 ref|ZP_00020880.1| hypothetical protein [Chloroflexus aurantiacus] 188 1e-46 ref|NP_781844.1| transcriptional regulatory protein [Clostridium... 185 1e-45 >ref|ZP_00044154.1| COG0583: Transcriptional regulator [Magnetococcus sp. MC-1] Length = 307 Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 108/273 (39%), Positives = 173/273 (63%) Query: 22 QLHIFYTVSERGSFSAAAQTLHMTQPAVTMQVQALEDYFGAKLFDRSSKKIMLSEAGRTL 81 +L +FY V++ SF+ AA+ L++TQPAVT Q++ LE++F +LFDR +I L+EAG + Sbjct: 7 RLRVFYAVAKHLSFTRAAEELYLTQPAVTFQIRQLEEHFDTRLFDRHHNRISLTEAGLEV 66 Query: 82 LPFALRSIQLMRETDQAMAAFTHMLEGRLLLGASLTIGEYVLPRLLGPFGKAYPHISIMM 141 +A R + L RET++A++ T + G + +GAS TIGEY+LPR+L + + + I + Sbjct: 67 YSYAERILDLYRETEKAVSELTGVTRGVVKVGASTTIGEYLLPRILSDYRDQFNDVQIRL 126 Query: 142 KVMNTSQLLEEIHKHQLNFGLIEAPVSHPDMVIEPVMGDELKLIVPREHPLAGKDEVTLA 201 + NT ++ ++ ++ G+IE PV + ++ + + DEL +I+P HPL DE+ + Sbjct: 127 SIDNTRTVVRKLEDATIDVGMIEGPVKNKNIARDGCLDDELVVILPPNHPLCDLDEIPVK 186 Query: 202 EALEHPFVLREQGSGTRRVMEEQLLAKGLDPGAMRVVMELGSTGAVKSAVEAGLGITIIS 261 E +PFV RE+GSGTR+V+ + LL GL + +V+ELGST AVK +VE G+GI I+S Sbjct: 187 ELKAYPFVSREEGSGTRQVVHDHLLHAGLPYDQLDIVLELGSTEAVKGSVEGGIGIGIVS 246 Query: 262 TSSVKHEVALGLLKIVNIADASFKRQFYAIHLK 294 ++S+ E+ LG+L + R IH K Sbjct: 247 SASLIKELKLGILVAKRVQGMRITRTINFIHQK 279 >ref|ZP_00099932.1| COG0583: Transcriptional regulator [Desulfitobacterium hafniense] Length = 334 Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 164/277 (59%), Gaps = 1/277 (0%) Query: 21 HQLHIFYTVSERGSFSAAAQTLHMTQPAVTMQVQALEDYFGAKLFDRSSKKIMLSEAGRT 80 Q +F V++ + + AA+ LHM+QP++++Q+Q +E+ +GA+ F+R++K + L++AG Sbjct: 16 QQFVVFKEVADTKNITLAAKRLHMSQPSISLQIQNMENLYGARFFNRTNKGVTLTKAGEV 75 Query: 81 LLPFALRSIQLMRETDQAMAAFTHMLEGRLLLGASLTIGEYVLPRLLGPFGKAYPHISIM 140 + ++ Q ++ T + +GA+LTIGEY+LP +L K P + Sbjct: 76 FYDHVNNILNILTVAQQQISVLTEDQRALIYIGATLTIGEYILPNILAYLYKIRPDVDFK 135 Query: 141 MKVMNTSQLLEEIHKHQLNFGLIEAPV-SHPDMVIEPVMGDELKLIVPREHPLAGKDEVT 199 +K+ NT + +E+ + +++ GLIE P + ++V+E DEL ++VP HP A + +T Sbjct: 136 VKIANTETISQEVIEKRIHIGLIEGPAPRNKEIVVEKFWQDELVVVVPSFHPWAARHSIT 195 Query: 200 LAEALEHPFVLREQGSGTRRVMEEQLLAKGLDPGAMRVVMELGSTGAVKSAVEAGLGITI 259 LAE + ++RE+GSGTR+V E L GLD + V MELGST A+K V AG+GITI Sbjct: 196 LAELAKERLIMREEGSGTRKVTELALKEMGLDLSQINVTMELGSTQAIKKVVAAGIGITI 255 Query: 260 ISTSSVKHEVALGLLKIVNIADASFKRQFYAIHLKST 296 IS+ +V E GL K++ + D+ R + L T Sbjct: 256 ISSLTVSRECENGLFKVLKVQDSPVYRPLNMLTLAHT 292 >ref|NP_848967.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae] dbj|BAC76129.1| lysR-like transcriptional regulator [Cyanidioschyzon merolae] Length = 303 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 161/279 (57%), Gaps = 3/279 (1%) Query: 16 LRMNFHQLHIFYTVSERGSFSAAAQTLHMTQPAVTMQVQALEDYFGAKLFDRSSKKIMLS 75 L QL IF + GSF AAQ+L+++QPAV++Q+Q LE A LFDRS +K L+ Sbjct: 4 LPFTLDQLRIFQAIVVEGSFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSHRKAKLT 63 Query: 76 EAGRTLLPFALRSIQLMRETDQAMAAFTHMLEGRLLLGASLTIGEYVLPRLLGPFGKAYP 135 EAG+ +A R + L ET +A+ H+ G L++GAS TIG Y++P L+G F + YP Sbjct: 64 EAGQVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYP 123 Query: 136 HISIMMKVMNTSQLLEEIHKHQLNFGLIEAPVSH---PDMVIEPVMGDELKLIVPREHPL 192 HI + ++V +T ++ + K ++ +I + P + I+P DEL LIVP +HP Sbjct: 124 HICVQLQVHSTRRIAWSVAKGHIDVAVIGGAIPTELIPLLSIQPFAEDELTLIVPPDHPF 183 Query: 193 AGKDEVTLAEALEHPFVLREQGSGTRRVMEEQLLAKGLDPGAMRVVMELGSTGAVKSAVE 252 A ++ + FV ++ S R+V+++ L G+D +++ MEL S A+K+AV+ Sbjct: 184 ARLSKIQKEDLYRLRFVSLDRHSTIRKVIDQILHQNGIDTNRLKMEMELNSIEAIKNAVQ 243 Query: 253 AGLGITIISTSSVKHEVALGLLKIVNIADASFKRQFYAI 291 GLG +S ++ E+ L L++ V I S KRQ Y I Sbjct: 244 WGLGAAFVSVCAIAKELELNLVREVEIEAISIKRQLYQI 282 >ref|ZP_00020880.1| hypothetical protein [Chloroflexus aurantiacus] Length = 316 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 4/281 (1%) Query: 14 GVLRMNFHQLHIFYTVSERGSFSAAAQTLHMTQPAVTMQVQALEDYFGAKLFDRSSKKIM 73 G + +N H L I+ V E+GSF+ AA+ L M+Q AV+ VQ LE G L +R ++ + Sbjct: 22 GKVTLNLHLLRIYVAVLEQGSFTKAAEVLTMSQSAVSRAVQELERQLGTTLLERRARGVA 81 Query: 74 LSEAGRTLLPFALRSIQLMRETDQAMAAFTHMLEGRLLLGASLTIGEYVLPRLLGPFGKA 133 + AG L A R R +A+ + GRL +GAS TIG Y+LP LLG + + Sbjct: 82 PTMAGTILGEHARRIFTHERLAIEALNELRGLQRGRLAIGASSTIGIYLLPPLLGNYHRR 141 Query: 134 YPHISIMMKVMNTSQLLEEIHKHQLNFGLIEAPV-SHPDMVIEPVMGDELKLIVPREHPL 192 YP I + + + NT Q++E + +Q++ +E PV ++ D+ + P DE+ +I +HPL Sbjct: 142 YPGIELFLDIGNTQQIIERLLSYQIDVAYVEGPVAANEDLQVVPWRSDEMVVIASPDHPL 201 Query: 193 AGKDEVTLAEALEHPFVLREQGSGTRRVMEEQLLAKGLDPGAMRVVMELGSTGAVKSAVE 252 + + ++ + PF++RE GSGTR+VME+ L A + +R VMELGST AVK AV Sbjct: 202 TRRVTLDCSDLQDAPFIMREPGSGTRKVMEQALAAHNV---TVRPVMELGSTEAVKQAVS 258 Query: 253 AGLGITIISTSSVKHEVALGLLKIVNIADASFKRQFYAIHL 293 AGLG++++S +++ E+ G L+++NI + +RQ + L Sbjct: 259 AGLGLSMVSRFTIQSELIAGKLRVLNIPGLNIQRQLSRVRL 299 >ref|NP_781844.1| transcriptional regulatory protein [Clostridium tetani E88] gb|AAO35781.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 303 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 163/284 (57%), Gaps = 13/284 (4%) Query: 17 RMNFHQLHIFYTVSERGSFSAAAQTLHMTQPAVTMQVQALEDYFGAKLFDRSSKKIMLSE 76 RM +L F TV + GSF+ AA L++TQPA++ ++ +E+Y+G +LF +K + L+E Sbjct: 10 RMIDFKLITFLTVVKVGSFTRAANVLNLTQPAISQHIKYIENYYGVELFKNKNKNMELTE 69 Query: 77 AGRTLLPFALRSIQLMRETDQAMAAFTHM-----LEGRLLLGASLTIGEYVLPRLLGPFG 131 G+ L + R ++ ++ HM + R ++GA+LTIG YV+P ++G + Sbjct: 70 EGKVLYKYG-RQVE-------NISNIVHMKLKNSINKRYVVGATLTIGGYVIPSIIGKYK 121 Query: 132 KAYPHISIMMKVMNTSQLLEEIHKHQLNFGLIEAPVSHPDMVIEPVMGDELKLIVPREHP 191 K + I +++KV NT +++ ++K ++ G+IE S + DEL L+V H Sbjct: 122 KEHNDIDVILKVENTDTVIKMLYKGEIELGVIEGGFSKEKIEYTKFKEDELVLVVSPNHK 181 Query: 192 LAGKDEVTLAEALEHPFVLREQGSGTRRVMEEQLLAKGLDPGAMRVVMELGSTGAVKSAV 251 A K+ V + E L+ +LRE GSGTR++ EE L+ G+ + ME+G+ A+ S V Sbjct: 182 FADKNFVNIEEILQDKLILREDGSGTRQIFEEHLIEMGIRKDDYNIYMEIGNISAIVSLV 241 Query: 252 EAGLGITIISTSSVKHEVALGLLKIVNIADASFKRQFYAIHLKS 295 ++ LG TIIS +VK + G LK V I + + +R+F I+LK Sbjct: 242 KSNLGCTIISREAVKENIEEGSLKEVQIENFNMRREFNFIYLKD 285 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 406,397,409 Number of extensions: 15545968 Number of successful extensions: 46941 Number of sequences better than 1.0e-05: 3189 Number of HSP's gapped: 45167 Number of HSP's successfully gapped: 3190 Length of query: 315 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 190 Effective length of database: 417,850,203 Effective search space: 79391538570 Effective search space used: 79391538570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)