BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0438.0003.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00130228.1| COG2200: FOG: EAL domain [Desulfovibrio desul... 175 1e-42 pir||C41872 groEL 3'-region hypothetical protein - Clostridium a... 167 4e-40 ref|NP_349308.1| Possible signal transduction protein (containin... 166 6e-40 gb|AAF34247.1| putative response regulator [Desulfovibrio gigas] 152 1e-35 ref|NP_716191.1| conserved hypothetical protein [Shewanella onei... 126 6e-28 >ref|ZP_00130228.1| COG2200: FOG: EAL domain [Desulfovibrio desulfuricans G20] Length = 766 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 6/312 (1%) Query: 6 GEIAEQIPEISIHHKCAYVDHIFKSNPRLQGVAVTDNGQPVALIMRIRFYQQIGTLYGFT 65 G +A + ++ + + + V +F+ + + +AV D+G+PV L+M +Q+ YG Sbjct: 440 GSLALPVTSVTGNTRVSTVRELFEQHHPMTSIAVVDDGRPVGLVMDYHLNRQLSAQYGVA 499 Query: 66 LYMGRSIELIMDGSPLVVEYKTPITEVSKLAMDRSEEHLYDYVLVTREGVMFGAVSVRDL 125 LY R + +MD +PLVV+ P+ ++ AM R + YD VLVTR G + GAVSV+ L Sbjct: 500 LYFKRPVSSVMDHTPLVVDENEPVECTAQRAMARGKLQAYDDVLVTRAGRLTGAVSVQSL 559 Query: 126 LLNFAEIQAVAASFLNPLTGLPGNLSINEWMVKSLLQEQ-FSVLYIDLDHFKAYNDTYGF 184 L A++Q A NPL+GLPGN+++ M + L Q F+++Y DLD+FK+YND+YGF Sbjct: 560 LNTLAKVQVELAKGSNPLSGLPGNVALEREMERRLHSGQRFALIYADLDNFKSYNDSYGF 619 Query: 185 KEGDRMLQATAEILKHCTLRLEXXXXXXXXXXXXXXXXXY---RYEEYCRTIIAEFDRIL 241 K GDR++ A +L R R E C+ ++ F R++ Sbjct: 620 KNGDRVILLLARLLSWAVRRHGTDSDFTAHIGGDDFVCAVHADRAERICQAVVRCFKRLV 679 Query: 242 QGFYHPGHLMQQHVLTESRSGVVEEIPLVSISIAVVTNRYRHFDSIEDLSGEAARLKKKS 301 + Y L + + R GV + LVS+S+AV+ S++++ AA++K + Sbjct: 680 RSCYCEKDLAKGWIRARGRDGVERQYSLVSVSLAVI--ECHGSVSLQEIGERAAQIKHFA 737 Query: 302 KMIRGSSFVDDR 313 K + G+ +V DR Sbjct: 738 KTLEGNVYVTDR 749 >pir||C41872 groEL 3'-region hypothetical protein - Clostridium acetobutylicum (fragment) Length = 409 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 152/294 (51%), Gaps = 7/294 (2%) Query: 4 QIGEIAEQIPEISIHHKCAYVDHIFKSNPRLQGVAVTDNGQPVALIMRIRFYQQIGTLYG 63 +IG IAE C+ + + F + G + +N PV L+M+ + T YG Sbjct: 92 KIGTIAENYSSFDRKVSCSDLKNYF-NKTSFTGACIVENSSPVGLVMKHTLDSVLATQYG 150 Query: 64 FTLYMGRSIELIMDGSPLVVEYKTPITEVSKLAMDRSEEHLYDYVLVTREGVMFGAVSVR 123 ++ R +EL+MD + LVV+Y T I +K+AM R + +YDYV+VT+ +G V+++ Sbjct: 151 VAIFSKRPVELVMDKNALVVDYNTSINSAAKMAMQRDTDKIYDYVIVTKNNTYYGIVTIK 210 Query: 124 DLLLNFAEIQAVAASFLNPLTGLPGNLSINEWMVKSL-LQEQFSVLYIDLDHFKAYNDTY 182 +LL I+ A LNPLTGLPGN+ I + + L E F VLY+DLD+FK YND Y Sbjct: 211 NLLEFTVTIEKNYAKELNPLTGLPGNILIEKTLSDILNSNESFCVLYLDLDNFKIYNDVY 270 Query: 183 GFKEGDRMLQATAEILKHCTLRLEXXXXXXXXXXXXXXXXXYRYE-EYC----RTIIAEF 237 GF+ GD++L+ TA +K C L L + E C + II F Sbjct: 271 GFENGDKILKFTANTIKDCLLELFTFKNFVGHIGGDDFICIIKASLEECYKVSQLIIDRF 330 Query: 238 DRILQGFYHPGHLMQQHVLTESRSGVVEEIPLVSISIAVVTNRYRHFDSIEDLS 291 D + F++ ++++ R GV ++ L SISIA V F++ +L+ Sbjct: 331 DSGILKFFNEIDSKNKYIVGLDRKGVEDKFNLTSISIAGVYGNIAEFNTSVNLA 384 >ref|NP_349308.1| Possible signal transduction protein (containing EAL, CBS and GGDEF domains) [Clostridium acetobutylicum] pir||E97232 probable signal transduction protein (containing EAL, CBS and GGDEF domains) [imported] - Clostridium acetobutylicum gb|AAK80648.1| Possible signal transduction protein (containing EAL, CBS and GGDEF domains) [Clostridium acetobutylicum] Length = 585 Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 152/294 (51%), Gaps = 7/294 (2%) Query: 4 QIGEIAEQIPEISIHHKCAYVDHIFKSNPRLQGVAVTDNGQPVALIMRIRFYQQIGTLYG 63 +IG IAE C+ + + F + G + +N PV L+M+ + T YG Sbjct: 268 KIGTIAENYSSFDRKVSCSDLKNYF-NKTSFTGACIVENSSPVGLVMKHTLDSVLATQYG 326 Query: 64 FTLYMGRSIELIMDGSPLVVEYKTPITEVSKLAMDRSEEHLYDYVLVTREGVMFGAVSVR 123 ++ R +EL+MD + LVV+Y T I +K+AM R + +YDYV+VT+ +G V+++ Sbjct: 327 VAIFSKRPVELVMDKNALVVDYNTSINSAAKMAMQRDTDKIYDYVIVTKNNTYYGIVTIK 386 Query: 124 DLLLNFAEIQAVAASFLNPLTGLPGNLSINEWMVKSL-LQEQFSVLYIDLDHFKAYNDTY 182 +LL I+ A LNPLTGLPGN+ I + + L E F VLY+DLD+FK YND Y Sbjct: 387 NLLEFTVTIEKNYAKELNPLTGLPGNILIEKTLSDILNSNESFCVLYLDLDNFKIYNDVY 446 Query: 183 GFKEGDRMLQATAEILKHCTLRLEXXXXXXXXXXXXXXXXXYRYE-EYC----RTIIAEF 237 GF+ GD++L+ TA +K C L L + E C + II F Sbjct: 447 GFENGDKILKFTANTIKDCLLELFTFKNFVGHIGGDDFICIIKASLEECYKVSQLIIDRF 506 Query: 238 DRILQGFYHPGHLMQQHVLTESRSGVVEEIPLVSISIAVVTNRYRHFDSIEDLS 291 D + F++ ++++ R GV ++ L SISIA V F++ +L+ Sbjct: 507 DSGILKFFNEIDSKNKYIVGLDRKGVEDKFNLTSISIAGVYGNIAEFNTSVNLA 560 >gb|AAF34247.1| putative response regulator [Desulfovibrio gigas] Length = 696 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 154/320 (48%), Gaps = 4/320 (1%) Query: 5 IGEIAEQIPEISIHHKCAYVDHIFKSNPRLQGVAVTDNGQPVALIMRIRFYQQIGTLYGF 64 I E+ P S + + P + V NG+P L+M+ + + T +G Sbjct: 377 IRELVMPCPTTSENATVREIKEQLADKPAQTSMVVVRNGRPCGLLMQYNTDRHLSTQFGM 436 Query: 65 TLYMGRSIELIMDGSPLVVEYKTPITEVSKLAMDRSEEHLYDYVLVTREGVMFGAVSVRD 124 +LY R + IMD +PL+VE PI +V+ LAM R +YD ++V + + G VSV+ Sbjct: 437 SLYYNREVARIMDPAPLIVEGDLPIEDVAALAMVRESTKVYDDIIVVDKEKLLGVVSVQR 496 Query: 125 LLLNFAEIQAVAASFLNPLTGLPGNLSINEWMVKSLLQEQFSVL-YIDLDHFKAYNDTYG 183 +L + Q A NPL+GLPGN+SI + + L + + YIDLD+FK YND YG Sbjct: 497 MLDQLTQTQVELAKGANPLSGLPGNVSIEREIERRLKGCHPTAMAYIDLDNFKVYNDVYG 556 Query: 184 FKEGDRMLQATAEILKHCTLRLEXX---XXXXXXXXXXXXXXXYRYEEYCRTIIAEFDRI 240 F+ GDR++ TA++L+ R + C I+ F Sbjct: 557 FERGDRIILLTADLLREAVKLCGGEGDFLGHIGGDDFLVMADPARVVDICNHIMHHFALR 616 Query: 241 LQGFYHPGHLMQQHVLTESRSGVVEEIPLVSISIAVVTNRYRHFDSIEDLSGEAARLKKK 300 + Y P + +++ + R G PL S+SIAV+ S+E LS A +KK Sbjct: 617 SKELYSPEDAARGYLVGKGRDGQTGRFPLTSLSIAVIDCPMDACFSMELLSNRTAAVKKH 676 Query: 301 SKMIRGSSFVDDRDLSASKS 320 +K + G+S V + L+A+ + Sbjct: 677 AKSVEGNSLVREPLLAATAA 696 >ref|NP_716191.1| conserved hypothetical protein [Shewanella oneidensis MR-1] gb|AAN53636.1| conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 584 Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 13/304 (4%) Query: 20 KCAYVDHIFKSNPRLQGVAVTDNGQPVALIMRIRFYQQIGTLYGFTLYMGRSIELIMDGS 79 K ++ F S P LQ V V + P+ +I R + T YG L+ ++ +MD Sbjct: 281 KLKHLSDTFSSQPALQAVVVVQDQLPLGIISRATLLELFSTPYGRALHENHAVSEVMDPQ 340 Query: 80 PLVVEYKTPITEVSKLAMDRSEEHLYDYVLVTREGVMFGAVSVRDLLLNFAEIQAVAASF 139 L +E P++ VS+L S + ++ R G + G +DLL E + A Sbjct: 341 VLQIEANEPLSIVSQLLTSESANTVAQQFIILRRGKLLGIGHTKDLLQRITEHRIKMARH 400 Query: 140 LNPLTGLPGNLSINEWMVKSLLQEQ-FSVLYIDLDHFKAYNDTYGFKEGDRMLQATAEIL 198 NPLT LPGN+ I E + + Q++ F + Y DL HFK YND YGF GD ++ A++L Sbjct: 401 ANPLTDLPGNVPIQEELKRLRTQQKPFYLAYFDLCHFKPYNDIYGFCRGDEVICEVADLL 460 Query: 199 -----KHCTLRLEXXXXXXXXXXXXXXXXXYRYEEYCRTIIAEFDRILQGFYHPGHLMQQ 253 +C + R + C+ I+ EF+ FY H Q Sbjct: 461 VKYKTDNCFI------GHVGGDDFVVISTCERLIDRCQHILTEFEANKPLFYSAEHWQAQ 514 Query: 254 HVLTESRSGVVEEIPLVSISIAVVTNRYRHFDSIEDLSGEAARLKKKSKMI-RGSSFVDD 312 +L + R G L+S+S+ V+T + + LS +AR KK++K G +++ Sbjct: 515 EMLADDRQGQACYHKLISLSVGVLTPAHTFNCNEHSLSTLSARAKKQAKSASNGFYLLEE 574 Query: 313 RDLS 316 RD+S Sbjct: 575 RDIS 578 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 424,792,152 Number of extensions: 15650961 Number of successful extensions: 35070 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 35264 Number of HSP's successfully gapped: 64 Length of query: 321 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 195 Effective length of database: 415,135,104 Effective search space: 80951345280 Effective search space used: 80951345280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)