BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0030.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAC19092.1| putative NAD(P)H oxidoreductase [Listeria innocua] 174 1e-42 ref|NP_471232.1| similar to putative NAD(P)H oxidoreductase [Lis... 173 1e-42 ref|NP_979737.1| unnamed protein product [Bacillus cereus ATCC 1... 167 1e-40 ref|NP_833155.1| NAD(P)H oxidoreductase YRKL [Bacillus cereus AT... 164 6e-40 gb|AAL66420.1| nitroreductase [Bacillus amyloliquefaciens] 161 6e-39 >emb|CAC19092.1| putative NAD(P)H oxidoreductase [Listeria innocua] Length = 177 Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 117/174 (67%) Query: 1 MKTLIILAHPNLEASRVNQRWKEELRQYPNDITVHELYKEYPDGNIDVPREQNLLEGYHH 60 MKTL+I+AHPN+E SRVN+ WKE L + ++ +HELY+ YP+ +IDV EQ L+ Y Sbjct: 1 MKTLVIIAHPNIENSRVNRVWKEALLKSTEEVAIHELYEVYPNWDIDVTFEQQQLQNYDK 60 Query: 61 IILQFPLYWYSYPPLLKKWFDEVWTYGWAYXXXXXXXXXXXXXXAISIGDKQENYQPEGS 120 +I+QFP YWYSYPPLLKKWFD+V++YGWAY A+SIGDK+ NY+ + Sbjct: 61 VIIQFPFYWYSYPPLLKKWFDDVFSYGWAYGSKGDKMAGKKLALAVSIGDKKYNYKEDAP 120 Query: 121 VSFTVDEVIAPFKASAGHVGAVALPYFAVFGASFQASDEDINHSAKEYINYILK 174 + +++D ++ PF+A+ H+ A ++G+SF+ +DE+I +A Y N +K Sbjct: 121 IGYSLDTLLTPFRATINHIRADYRGAHTIYGSSFEVTDEEIVENAYVYANKFIK 174 >ref|NP_471232.1| similar to putative NAD(P)H oxidoreductase [Listeria innocua] pir||AH1669 probable NAD(P)H oxidoreductase homolog lin1898 [imported] - Listeria innocua (strain Clip11262) emb|CAC97128.1| lin1898 [Listeria innocua] Length = 177 Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 117/174 (67%) Query: 1 MKTLIILAHPNLEASRVNQRWKEELRQYPNDITVHELYKEYPDGNIDVPREQNLLEGYHH 60 MKTL+I+AHPN+E SRVN+ WKE L + ++ +HELY+ YP+ +IDV EQ L+ Y Sbjct: 1 MKTLVIIAHPNIENSRVNRVWKEALLKSTEELAIHELYEVYPNWDIDVAFEQQQLQNYDK 60 Query: 61 IILQFPLYWYSYPPLLKKWFDEVWTYGWAYXXXXXXXXXXXXXXAISIGDKQENYQPEGS 120 +I+QFP YWYSYPPLLKKWFD+V++YGWAY A+SIGDK+ NY+ + Sbjct: 61 VIIQFPFYWYSYPPLLKKWFDDVFSYGWAYGSKGDKMAGKKLALAVSIGDKKYNYKEDAP 120 Query: 121 VSFTVDEVIAPFKASAGHVGAVALPYFAVFGASFQASDEDINHSAKEYINYILK 174 + +++D ++ PF+A+ H+ A ++G+SF+ +DE+I +A Y N +K Sbjct: 121 IDYSLDTLLTPFRATINHIRADYRGAHTIYGSSFEVTDEEIVENAYVYANKFIK 174 >ref|NP_979737.1| unnamed protein product [Bacillus cereus ATCC 10987] gb|AAS42345.1| unnamed protein product [Bacillus cereus ATCC 10987] Length = 178 Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 3/176 (1%) Query: 1 MKTLIILAHPNLEASRVNQRWKEELRQYPNDITVHELYKEYPDGNIDVPREQNLLEGYHH 60 MKTL+I+AHP++E S++N+RW EEL +Y ++ITVHELYK P+ +V EQ LL + Sbjct: 2 MKTLVIVAHPDIEKSKINKRWIEELEKYSDEITVHELYKAAPNWEFNVEEEQKLLVEHDR 61 Query: 61 IILQFPLYWYSYPPLLKKWFDEVWTYGWAYXXXXXXXXXXXXXXAISIGDKQENYQPEGS 120 I QFPLYWYS PPLLKKWFD+V TYG+AY AISIG +++Y+ G Sbjct: 62 YIFQFPLYWYSSPPLLKKWFDDVLTYGFAYGSKGDKVKGKEFGVAISIGGLEKDYENSG- 120 Query: 121 VSFTVDEVIAPFKASAGHVGAVALPYFAVFGASFQASDEDINHSAKEYINYILKHQ 176 T+DE+ PF+A+ + +P F ++GA ++ SDE+I+ SA EY+ Y++ + Sbjct: 121 --ITMDELTKPFQATCLYTDMKFIPSFYLYGAEYKLSDEEIDKSAPEYVRYVMNKE 174 >ref|NP_833155.1| NAD(P)H oxidoreductase YRKL [Bacillus cereus ATCC 14579] gb|AAP10356.1| NAD(P)H oxidoreductase YRKL [Bacillus cereus ATCC 14579] Length = 178 Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 79/176 (44%), Positives = 117/176 (66%), Gaps = 3/176 (1%) Query: 1 MKTLIILAHPNLEASRVNQRWKEELRQYPNDITVHELYKEYPDGNIDVPREQNLLEGYHH 60 M+TL+I+AHP++E S++N+RW EEL ++ ++ITVHELYK P+ ++ EQ LL + Sbjct: 2 MRTLVIVAHPHIEKSKINKRWIEELEKHSDEITVHELYKVAPNWEFNIEEEQKLLVEHDR 61 Query: 61 IILQFPLYWYSYPPLLKKWFDEVWTYGWAYXXXXXXXXXXXXXXAISIGDKQENYQPEGS 120 I QFPLYWYS PPLLKKWFD+V TYG+AY AISIG +++Y+ G Sbjct: 62 YIFQFPLYWYSTPPLLKKWFDDVLTYGFAYGSQGDKVKGKEFGVAISIGGLEKDYENSG- 120 Query: 121 VSFTVDEVIAPFKASAGHVGAVALPYFAVFGASFQASDEDINHSAKEYINYILKHQ 176 T+DE+ PF+A+ + G +P F ++GA ++ SDE+I+ SA EY+ Y++ + Sbjct: 121 --ITMDELTKPFQATCLYTGMEFIPSFYLYGAEYKLSDEEIDKSAPEYVQYVMNKK 174 >gb|AAL66420.1| nitroreductase [Bacillus amyloliquefaciens] Length = 174 Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 80/174 (45%), Positives = 108/174 (62%), Gaps = 2/174 (1%) Query: 1 MKTLIILAHPNLEASRVNQRWKEELRQYPNDITVHELYKEYPDGNIDVPREQNLLEGYHH 60 MK L++ HP++E S VN+ W EEL+++ +++TV ELYKEYPDG ID +E+ L E Y Sbjct: 1 MKVLVLAVHPDMENSAVNKAWAEELKKH-DELTVRELYKEYPDGQIDAEKERQLCEQYDR 59 Query: 61 IILQFPLYWYSYPPLLKKWFDEVWTYGWAYXXXXXXXXXXXXXXAISIGDKQENYQPEGS 120 I+ QFPLYWYS PPLLK W D V +YGWAY A+S+G ++ YQ GS Sbjct: 60 IVFQFPLYWYSAPPLLKTWMDHVLSYGWAYGSKGKALHGKELMLAVSVGAGEDAYQAGGS 119 Query: 121 VSFTVDEVIAPFKASAGHVGAVALPYFAVFGASFQASDEDINHSAKEYINYILK 174 FT+ E++ PF+A A G LP FA++G + A DI+ +AK YI K Sbjct: 120 NHFTLSELLRPFQAMANFTGMTYLPAFALYGVN-GADATDIHDNAKRLAAYIKK 172 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 266,960,275 Number of extensions: 9908643 Number of successful extensions: 20984 Number of sequences better than 1.0e-05: 84 Number of HSP's gapped: 20943 Number of HSP's successfully gapped: 84 Length of query: 177 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 60 Effective length of database: 439,570,995 Effective search space: 26374259700 Effective search space used: 26374259700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)