BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0025.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242730.1| BH1864~unknown conserved protein in others [Bac... 160 3e-38 gb|EAC89451.1| unknown [environmental sequence] 155 1e-36 ref|NP_469565.1| similar to sugar ABC transporter, sugar-binding... 100 6e-20 ref|NP_622452.1| Sugar-binding periplasmic proteins/domains [The... 100 6e-20 ref|NP_302209.1| sugar transport periplasmic binding protein [My... 97 7e-19 >ref|NP_242730.1| BH1864~unknown conserved protein in others [Bacillus halodurans] pir||H83882 hypothetical protein BH1864 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05583.1| BH1864~unknown conserved protein in others [Bacillus halodurans] Length = 461 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/409 (30%), Positives = 193/409 (47%), Gaps = 35/409 (8%) Query: 1 VAPYKKAIQRFEDKFPNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQ 60 +A + + + FE+ PNIKV + HI DY K+ TM+AG PDV G + Sbjct: 56 LAVFNELVDNFENDNPNIKVNVIHIPDDYSGKMNTMLAGGTAPDVVFTSDGDFG-GWVKA 114 Query: 61 GKFYNLQEFLDHDADISPDTLVPNIIYSLEPGNVIGIG---PGPESFG---LFYNEDIFK 114 G F N+Q+ ++ + D + G V+G G P+ G LFYN+++F Sbjct: 115 GLFLNIQDMVEESSINLEDMWESALSRYRWDGRVLGEGDLYALPKDIGPSALFYNKELFD 174 Query: 115 EAGIAPPPSNVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNASTWWGVY 174 EAG+ P V TWDE +E AK LT+D NG D Q+G+ WW Sbjct: 175 EAGVPYPDPEVP--MTWDELLEKAKALTIDENGNGRPD---------QFGL-GPIWW--- 219 Query: 175 SNFIYSNGGDFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIPATNVALQ 234 FI+SNGGD +S D +F +N+PEAVEA+Q ++DL +V+ V+P + + A + + Sbjct: 220 EGFIWSNGGDILSEDRTTFVMNEPEAVEALQFVADLTHVHKVAPDSRSLEAMDADQM-FE 278 Query: 235 TKKVAMTIDGQWASAGLAQSKFNFNVGVMP--VLKEPVTTVVCAMFSIFKSTEHPQEAWE 292 T ++AM G+W + F+++V P + ++I K T P+EA++ Sbjct: 279 TGRIAMMTAGRWMVPTYRKLDFDWDVAPPPAGATGVSSSWSGSVGYAINKDTNFPEEAFQ 338 Query: 293 LMKALVDPEASIDMITAGTWMPSLKDWYTDPALLAKWTENLEARPSGYKEAIVDVILTKG 352 L++ L G +P+ K L +P E I+ Sbjct: 339 LIEYLAGERGQEIQTELGFAIPTYKSVSETDVFL---------QPGEKPENAEAFIIGAE 389 Query: 353 HQTPTGYVKNFNNI-MDIVNPALDKVWLGQQSAQEAMDSIAAKVQAQIK 400 Q P + NN +D VN L +W G++SA+E +D IA +VQ ++ Sbjct: 390 TQRPGPWTLTPNNRWLDHVNQNLTYLWNGERSAEEILDEIADEVQQLLE 438 >gb|EAC89451.1| unknown [environmental sequence] Length = 247 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 118/217 (54%), Gaps = 8/217 (3%) Query: 5 KKAIQRFEDKF----PNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQ 60 KKA++ D F P I V+ QHI +Y K+ TM++G + PDV + G P A Q Sbjct: 35 KKAVEDVIDDFNKSHPGIHVKAQHIPQNYHEKVMTMISGGNAPDVGYI-GGDEVQPWATQ 93 Query: 61 GKFYNLQEFLDHDADISPDTLVPNIIYSLEPGNVIGIGPGPESFGLFYNEDIFKEAGIAP 120 G NL + D D+ V Y + G + ES ++YN+ IF EAGI Sbjct: 94 GVIKNLSPYFAKDPDLQSRMEVSR--YRIGDG-IAATNAALESMIIYYNKKIFDEAGIPY 150 Query: 121 PPSNVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNASTWWGVYSNFIYS 180 PPS +AWTWDEFV AKKLT D NG A P+FD I+ YG WWG + FIYS Sbjct: 151 PPSKWTEAWTWDEFVNVAKKLTKDKNGNNALSPNFDKDNIEIYGFGHDRWWGQWMPFIYS 210 Query: 181 NGGDFISADGKSFGLNQPEAVEAIQKISDLMNVYHVS 217 N G IS DGKS ++QP ++EA K +DL +HVS Sbjct: 211 NKGKIISDDGKSVLIDQPASIEANSKFADLSWKHHVS 247 >ref|NP_469565.1| similar to sugar ABC transporter, sugar-binding protein [Listeria innocua] pir||AE1460 sugar ABC transporter, sugar-binding protein homolog lin0220 [imported] - Listeria innocua (strain Clip11262) emb|CAC95453.1| lin0220 [Listeria innocua] Length = 418 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 35/387 (9%) Query: 6 KAIQRFEDKFPNIKVELQHIA-ADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGKFY 64 K ++ FE + P+IKV +Q IA DY TKL T +AG D PD + T AE+G Sbjct: 49 KMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETF-MQYAEKGVLA 107 Query: 65 NLQEFLDHDADISPDTLVPNIIYSLE-PGNVIGIGPGPESFGLFYNEDIFKEAGIAPPPS 123 +L +++ D D P TL + + G G+ + YN+D+F +AG+ P + Sbjct: 108 DLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTA 167 Query: 124 NVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNASTWWGVYSNFIYSNGG 183 + WTW + AKKLT N K +G + + NGG Sbjct: 168 D----WTWKDEEAAAKKLTDAKN--------------KVWGTSQPVTMNEFFKVAAQNGG 209 Query: 184 DFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQ-SKNIPATNVALQTKKVAMTI 242 D +N PE VEA+ +++ + V+PSP S +P ++AM Sbjct: 210 SIFDKDMTKTTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPED--LFMNGQIAMLH 267 Query: 243 DGQWASAGLAQSKFNFNVGVMPVLKEPVTTVVCAMFSIFKSTEHPQEAWELMKALVDPEA 302 G W + F ++V V K+ T + K ++ + A++ + + Sbjct: 268 TGIWLFDMFQDAPFKWDVQVEAGNKQKATHFFANGIGVSKDSDKKEAAFKFASFMSANKE 327 Query: 303 SIDMITAGTW-MPSLKDWYTDPALLAKWTENLEARPSGYKEAIVDVILTKGHQTPTGYVK 361 + + A W +P+ + + +L + L+A P +EA+ + + + VK Sbjct: 328 AAKIRIANNWELPATE----NKEILQPY---LDATPPDNREAVFESL---QYMVLPPVVK 377 Query: 362 NFNNIMDIVNPALDKVWLGQQSAQEAM 388 ++N I D N +KV G+ + ++A+ Sbjct: 378 DWNKISDYTNSEFEKVLNGESTPEKAL 404 >ref|NP_622452.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] gb|AAM24056.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] Length = 417 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 111/393 (28%), Positives = 178/393 (45%), Gaps = 47/393 (11%) Query: 8 IQRFEDKFPNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGKFYNLQ 67 I +F++K+PNI V+++ I DY KL T +A N PD+ ++S A L G L Sbjct: 63 IAKFKEKYPNIDVQIETIVGDYMQKLQTELASNTAPDIFYLDS-MPAPQLMSSGVLEPLD 121 Query: 68 EFL-DHDADISPDTLVPNIIYSLE-PGNVIGIGPGPESFGLFYNEDIFKEAGIAPPPSNV 125 E++ ++ D+ + P ++ + + G G+ + LFYN+D+FKEAGI PP Sbjct: 122 EYIKKYNVDV--NDFEPALLSAFQWEGKTYGLPKDYNTLVLFYNKDMFKEAGINEPPK-- 177 Query: 126 ADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNASTWWGVYSNFIYSNGGDF 185 TW+E ETAKKLT NG G+ S + FI N G Sbjct: 178 ----TWEELRETAKKLT--KNGVK--------------GIVLSADLARFDAFINQNDGS- 216 Query: 186 ISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIPATNVALQTKKVAMTIDGQ 245 + DGK LN P+ EA+ L+ V+ +P Q+ A KK AM I+G Sbjct: 217 VYKDGK-VTLNLPQNAEALDFYVGLIIRDKVADTP-QNMGEGWNGDAFAAKKAAMAIEGG 274 Query: 246 WASAGLAQSKFNFNVGV--MPVLKEPVTTVVCAMFSIFKSTEHPQEAWELMKALVDPEAS 303 W L + + N G+ +P K+ T + + K+++H EA++L++ L E Sbjct: 275 WMIPFLKEKAPDLNYGIAELPAGKKKSTMAFTVAYVMNKNSKHKDEAFKLIEFLTGKEGQ 334 Query: 304 IDMITAGTWMPSLKDWYTDPALLAKWTENLEARPSGYKEAIVDVILTKGHQTPTGYVKNF 363 ++ +G +PS K ++ A + E R I + P + Sbjct: 335 QFVVDSGLALPSRK------SMEANFKEKYPER--------APFIDGASYAVPWQFGLYG 380 Query: 364 NNIMDIVNPALDKVWLGQ-QSAQEAMDSIAAKV 395 ++D N A + + + Q SAQEA+D+ +V Sbjct: 381 TKLVDAANKACEALIMKQIGSAQEALDNAQKEV 413 >ref|NP_302209.1| sugar transport periplasmic binding protein [Mycobacterium leprae] pir||C87130 sugar transport periplasmic binding protein uspC [imported] - Mycobacterium leprae emb|CAC30723.1| sugar transport periplasmic binding protein [Mycobacterium leprae] Length = 446 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 17/324 (5%) Query: 4 YKKAIQRFEDKFPNIKVELQHIA-ADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGK 62 Y ++ Q F P+I+V +A + Y L T VAG D+ + S +A A+ G+ Sbjct: 55 YSQSFQAFTRTHPDIEVHTNVVAYSKYFNTLRTDVAGGSADDIFWLSSAYLA-AYADNGR 113 Query: 63 FYNLQEFLDHDADISPDTLVPNIIYSLEPGNVIGIGPGPESFGL--FYNEDIFKEAGIAP 120 N+ L A + P ++ + P G+ FYN D+ AGI P Sbjct: 114 LINISNSLGQRATSDWE---PAVVDQFTRAGALWGVPQLTDAGIAVFYNADLLTAAGIDP 170 Query: 121 PPSNVADAWTW---DEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNAST-WWGVYSN 176 N WT D +LT+DTNG A P FD R+++Q+G NA+ +Y N Sbjct: 171 VQLNRMQ-WTSNDDDTLRPLLTQLTLDTNGHVAKTPGFDSRRVRQWGYNAANDPQAIYLN 229 Query: 177 FIYSNGGDFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIP-ATNVALQT 235 +I S GG F D F + P AVEA + + L+N HV+P ++ N + + Sbjct: 230 YIGSAGGVFQRGD--EFAFDNPSAVEAFRYLVGLINNDHVAPPASETNNNGDFSRNQFLS 287 Query: 236 KKVAMTIDGQWASAGLA-QSKFNFNVGVMPVLKEPVTTVVCAMFSIFKS-TEHPQEAWEL 293 ++A+ G + A +A +++F++ + +MP + +V + S T+HP ++ Sbjct: 288 GRMALFQSGTYNLALIAREARFHWGIAMMPTGPQGRVSVTNGIAVAGNSATKHPDAVRQV 347 Query: 294 MKALVDPEASIDMITAGTWMPSLK 317 + + E + + G +P+++ Sbjct: 348 LAWMGSREGNAYLGRHGAAVPAVR 371 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 645,348,052 Number of extensions: 28031049 Number of successful extensions: 71168 Number of sequences better than 1.0e-05: 122 Number of HSP's gapped: 71094 Number of HSP's successfully gapped: 124 Length of query: 407 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 279 Effective length of database: 409,704,906 Effective search space: 114307668774 Effective search space used: 114307668774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)