BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0014.p
         (1121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_822868.1| hypothetical protein [Streptomyces avermitilis ...    66   6e-09

>ref|NP_822868.1| hypothetical protein [Streptomyces avermitilis MA-4680]
 dbj|BAC69403.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 256

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 8/228 (3%)

Query: 53  GAYEGRLALAGAEVTKDANVVLSALRHPMASVRNTAAGLLAKV-ASDTDIERELPHLSQD 111
           GAYE  +A+  A V +    +   +      VR  A  +   +   DT  E  L    + 
Sbjct: 22  GAYERGIAVVAASVARGTQWIAERIADAEPFVRGHALRVADSLQVPDTVYESALGDACEA 81

Query: 112 CRRKLLRSVSFMNRQELAERLLPVVYARWGAEEAVIVLPACRKDTVSQWLTEIGYALKDW 171
             R LLR +    R  LA+RL   +   WG  EA  +LP C  +TV++ L  + +A+  W
Sbjct: 82  VCRDLLRGIVVGRRTALADRLADGLRRDWGDAEAARLLPGCAPETVARLLPGLFHAVTGW 141

Query: 172 NKLAGRHPDAVAEYFKTTLANTPFREQGYVWWRFSSAFEILCRT---KAEVVLECAANHG 228
             LA RHP  V +  +  LA  P   +   W R++ A          +A  +LE     G
Sbjct: 142 KTLANRHPRTVLDAAEQALATLPEALRAPWWSRYAPAVAATVTAEPLRARALLE---RLG 198

Query: 229 PMGILHPALKKQLSTLTRTNPDAVYRLLTRKESRSDLISQGIPDGVLK 276
           P   + P L+K L       P  + RLL      +    +G+  GVL+
Sbjct: 199 PE-TMPPRLRKHLGDFAVAAPGRLLRLLLTPAWHAVRRHRGLGPGVLR 245


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 1,511,561,921
Number of extensions: 59764892
Number of successful extensions: 151330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151330
Number of HSP's successfully gapped: 1
Length of query: 1121
Length of database: 757,237,578
Length adjustment: 136
Effective length of query: 985
Effective length of database: 387,984,114
Effective search space: 382164352290
Effective search space used: 382164352290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)