BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0009.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAG23526.1| xylanase A [Paenibacillus sp. KCTC8848P] 342 3e-93 dbj|BAA06837.1| xylanase I precursor [Aeromonas punctata] 340 9e-93 pir||S48126 endo-1,4-beta-xylanase (EC 3.2.1.8) S precursor - Ba... 337 1e-91 gb|AAL32473.1| endo-xylanase [Bacillus sp. NBL420] 335 5e-91 ref|NP_389765.1| endo-1,4-beta-xylanase [Bacillus subtilis] >gi|... 335 5e-91 >gb|AAG23526.1| xylanase A [Paenibacillus sp. KCTC8848P] Length = 212 Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/213 (81%), Positives = 189/213 (88%), Gaps = 2/213 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFK +KK++T+V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSV W N Sbjct: 1 MFKSSKKLLTVVLAASMSFGFFASTSNAAT-DYWQNWTDGGGTVNAVNGSGGNYSVTWKN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 +GNFVVGKGWT GSPDRTINYNAGVWAPSGNGYL LYGWTRNSLIEYYVVDSWGTYRPTG Sbjct: 60 SGNFVVGKGWTTGSPDRTINYNAGVWAPSGNGYLALYGWTRNSLIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQ-TFQQFWSVRQTKRPTGSNATITFANHVKA 179 TYKGTVTSDGGTYDIYTTMRY+APSI+G + TF Q+WSVRQTKRPTG N+TITF+NHVKA Sbjct: 120 TYKGTVTSDGGTYDIYTTMRYDAPSIEGQKTTFIQYWSVRQTKRPTGGNSTITFSNHVKA 179 Query: 180 WASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 WA +GM+LG++WSYQVLATEGYQSSGSSNVTVW Sbjct: 180 WARQGMHLGNNWSYQVLATEGYQSSGSSNVTVW 212 >dbj|BAA06837.1| xylanase I precursor [Aeromonas punctata] Length = 211 Score = 340 bits (873), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 169/212 (79%), Positives = 186/212 (87%), Gaps = 1/212 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF KK+MT+V+A SMS DYWQNWTDGGGTVNAVNGSGGNYSV+W N Sbjct: 1 MFKFGKKLMTVVLAASMSFGVFAATSSAAT-DYWQNWTDGGGTVNAVNGSGGNYSVSWQN 59 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT G+P+R +NYNAGV+APSGNGYLT YGWTRN+LIEYYVVDSWGTYRPTG Sbjct: 60 TGNFVVGKGWTYGTPNRVVNYNAGVFAPSGNGYLTFYGWTRNALIEYYVVDSWGTYRPTG 119 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQTFQQFWSVRQTKRPTGSNATITFANHVKAW 180 TYKGTV SDGGTYDIYTTMRYNAPSIDG QTF Q+WSVRQ+KRPTG N+TITF+NHV AW Sbjct: 120 TYKGTVNSDGGTYDIYTTMRYNAPSIDGTQTFPQYWSVRQSKRPTGVNSTITFSNHVNAW 179 Query: 181 ASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 SKGM LG+SWSYQV+ATEGYQSSG++NVTVW Sbjct: 180 PSKGMYLGNSWSYQVMATEGYQSSGNANVTVW 211 >pir||S48126 endo-1,4-beta-xylanase (EC 3.2.1.8) S precursor - Bacillus sp. (strain YA-14) emb|CAA41783.1| endo-1, 4-beta-xylanase [Bacillus sp. YA-14] Length = 213 Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 171/213 (80%), Positives = 180/213 (84%), Gaps = 1/213 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF K + + A MS DYWQNWTDGGG VNAVNGSGGNYSVNWSN Sbjct: 1 MFKFKKNFLVGLSAALMSISLFSATASAASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSN 60 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT GSP RTINYNAGVWAP+GNGYLTLYGWTR+ LIEYYVVDSWGTYRPTG Sbjct: 61 TGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTG 120 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQ-TFQQFWSVRQTKRPTGSNATITFANHVKA 179 TYKGTV SDGGTYDIYTT RYNAPSIDG + TF Q+WSVRQTKRPTGSNATITF+NHV A Sbjct: 121 TYKGTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQYWSVRQTKRPTGSNATITFSNHVNA 180 Query: 180 WASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 W S GMNLGS+W+YQVLATEGYQSSGSSNVTVW Sbjct: 181 WKSHGMNLGSNWAYQVLATEGYQSSGSSNVTVW 213 >gb|AAL32473.1| endo-xylanase [Bacillus sp. NBL420] Length = 213 Score = 335 bits (858), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 169/213 (79%), Positives = 177/213 (83%), Gaps = 1/213 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF + + + A MS DYWQNWTDGGGTVNAVNG GGNYSVNWSN Sbjct: 1 MFKFKRNFLVGLTAALMSISLFSATASAASPDYWQNWTDGGGTVNAVNGPGGNYSVNWSN 60 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT GSP RTINYNAGVWAP+GNGYL LYGWTR LIEYYVVDSWGTYRPTG Sbjct: 61 TGNFVVGKGWTTGSPSRTINYNAGVWAPNGNGYLALYGWTRAPLIEYYVVDSWGTYRPTG 120 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQ-TFQQFWSVRQTKRPTGSNATITFANHVKA 179 TYKGTV SDGGTYDIYTT RYNAPSIDG + TF Q+WSVRQTKRPTGSNA ITF+NHV+A Sbjct: 121 TYKGTVKSDGGTYDIYTTTRYNAPSIDGEKTTFTQYWSVRQTKRPTGSNAKITFSNHVRA 180 Query: 180 WASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 W S GMNLGS WSYQVLATEGYQSSGSSNVTVW Sbjct: 181 WKSHGMNLGSIWSYQVLATEGYQSSGSSNVTVW 213 >ref|NP_389765.1| endo-1,4-beta-xylanase [Bacillus subtilis] sp|P18429|XYNA_BACSU Endo-1,4-beta-xylanase A precursor (Xylanase A) (1,4-beta-D-xylan xylanohydrolase A) pir||I40569 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor - Bacillus subtilis gb|AAA22897.1| xylanase (EC 3.2.1.8) gb|AAB84458.1| xylanase [Bacillus subtilis] emb|CAB13776.1| endo-1,4-beta-xylanase [Bacillus subtilis subsp. subtilis str. 168] prf||1209158A xylanase Length = 213 Score = 335 bits (858), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 169/213 (79%), Positives = 180/213 (84%), Gaps = 1/213 (0%) Query: 1 MFKFNKKIMTLVMAVSMSCXXXXXXXXXXXXDYWQNWTDGGGTVNAVNGSGGNYSVNWSN 60 MFKF K + + A MS DYWQNWTDGGG VNAVNGSGGNYSVNWSN Sbjct: 1 MFKFKKNFLVGLSAALMSISLFSATASAASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSN 60 Query: 61 TGNFVVGKGWTVGSPDRTINYNAGVWAPSGNGYLTLYGWTRNSLIEYYVVDSWGTYRPTG 120 TGNFVVGKGWT GSP RTINYNAGVWAP+GNGYLTLYGWTR+ LIEYYVVDSWGTYRPTG Sbjct: 61 TGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTG 120 Query: 121 TYKGTVTSDGGTYDIYTTMRYNAPSIDGIQ-TFQQFWSVRQTKRPTGSNATITFANHVKA 179 TYKGTV SDGGTYDIYTT RYNAPSIDG + TF Q+WSVRQ+KRPTGSNATITF+NHV A Sbjct: 121 TYKGTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFSNHVNA 180 Query: 180 WASKGMNLGSSWSYQVLATEGYQSSGSSNVTVW 212 W S GMNLGS+W+YQV+ATEGYQSSGSSNVTVW Sbjct: 181 WKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.130 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 355,395,762 Number of extensions: 16732983 Number of successful extensions: 30282 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 29663 Number of HSP's successfully gapped: 200 Length of query: 212 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 92 Effective length of database: 431,425,698 Effective search space: 39691164216 Effective search space used: 39691164216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)