BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0005.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060992.1| COG1106: Predicted ATPases [Clostridium therm... 69 5e-11 gb|AAN33168.1| RloA [Campylobacter jejuni] >gi|23452797|gb|AAN33... 65 8e-10 gb|AAM00828.1| RloA [Campylobacter jejuni] >gi|19881254|gb|AAM00... 63 3e-09 gb|AAN33150.1| RloA [Campylobacter jejuni] 59 9e-08 ref|NP_904428.1| abortive infection protein, putative [Porphyrom... 55 1e-06 >ref|ZP_00060992.1| COG1106: Predicted ATPases [Clostridium thermocellum ATCC 27405] Length = 432 Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 15/153 (9%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+++ +NF+SF+ + S+ A +Q+ L I + L SAVIYG NAS Sbjct: 1 MLIKYVFQNFRSFKGKSELSMK-AGRQRTLDENL------IRENGLRILPSAVIYGANAS 53 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GK+NII ++ +++ I+L G + S+ + EL P ++P+ F I F + Sbjct: 54 GKSNIIMSLALMREIVLLGSV------GTSHPYLNNFELYPFVHSIEQSPMLFEIEFINQ 107 Query: 121 GLMFEYKLSLDLGSFLEEGYNRKVLSEVLRVNE 153 G+ F Y + SF E+G NR+++SE+L +N Sbjct: 108 GVHFLYSFEVMTKSF-EKG-NRRIVSEMLWINH 138 >gb|AAN33168.1| RloA [Campylobacter jejuni] gb|AAN33171.1| RloA [Campylobacter jejuni] Length = 429 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 14/139 (10%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+EFR +NF S QDE I S+ + G K+ L S+VIYG NAS Sbjct: 1 MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTN------GDKKLALLKSSVIYGANAS 54 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADKSKTPVDFSIRFTDS 120 GK+NI+ A+ +K+I++ KK + + T L+ N +K P F I F + Sbjct: 55 GKSNIVKALQTMKTIVISSA-----KKQRGDKLPITPFLLGNEDNK---PTKFEIIFIQN 106 Query: 121 GLMFEYKLSLDLGSFLEEG 139 ++Y L+ LEE Sbjct: 107 DTKYQYGFILNSEKILEEW 125 >gb|AAM00828.1| RloA [Campylobacter jejuni] gb|AAM00861.1| RloA [Campylobacter jejuni] gb|AAM00881.1| RloA [Campylobacter jejuni] Length = 440 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 16/140 (11%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+EFR +NF S QDE I S+ + G K+ L S+VIYG NAS Sbjct: 1 MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTN------GDKKLALLKSSVIYGANAS 54 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPN-SADKSKTPVDFSIRFTD 119 GK+NI+ A+ +K+I++ S + L + P D+ P F I F Sbjct: 55 GKSNIVKALQTMKTIVI---------SSANTQRGDKLPITPFLLGDEDDKPTKFEIIFIQ 105 Query: 120 SGLMFEYKLSLDLGSFLEEG 139 + ++Y L+ LEE Sbjct: 106 NDTKYQYGFILNSEKILEEW 125 >gb|AAN33150.1| RloA [Campylobacter jejuni] Length = 434 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 16/140 (11%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+EFR +NF S QDE + S+ + L + K L S+V+YG NAS Sbjct: 1 MLIEFRVENFLSIQDEQVLSMVASSDNTFLNSHIS------NYGKLKLLKSSVLYGANAS 54 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPN-SADKSKTPVDFSIRFTD 119 K+NII A+ +K+I++ S L +IP D+ P F I F Sbjct: 55 XKSNIIKALKTMKTIVI---------SSAKKQRGDKLPIIPFLLGDEDNKPTKFEIIFIQ 105 Query: 120 SGLMFEYKLSLDLGSFLEEG 139 + ++Y L+ LEE Sbjct: 106 NDTKYQYGFILNSEKILEEW 125 >ref|NP_904428.1| abortive infection protein, putative [Porphyromonas gingivalis W83] gb|AAQ65327.1| abortive infection protein, putative [Porphyromonas gingivalis W83] Length = 433 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 18/133 (13%) Query: 1 MLLEFRTKNFKSFQDELIFSLTPAPKQKGLXXXXXXXXXKIGSKEYKGLSSAVIYGPNAS 60 ML+ F KNF+SF+DE S+ A K L I YK L +AV+YG N+S Sbjct: 1 MLVNFTFKNFRSFRDEKTLSME-ASAIKELSKSV------IRKGAYKLLPAAVLYGANSS 53 Query: 61 GKTNIIGAMDVLKSIILRGHIRNEDKKSKSNAAASTLELIPNSADK--SKTPVDFSIRFT 118 GK+N + A+ ++SI+L N TL P D+ ++ P F I+F Sbjct: 54 GKSNALFALAKMRSIVLDSVKLN---------PQDTLRFDPFMLDRESAQKPTSFEIQFL 104 Query: 119 DSGLMFEYKLSLD 131 G+ + Y D Sbjct: 105 KDGVKYRYGFEYD 117 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 268,585,250 Number of extensions: 10440073 Number of successful extensions: 35930 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 35931 Number of HSP's successfully gapped: 6 Length of query: 203 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 83 Effective length of database: 431,425,698 Effective search space: 35808332934 Effective search space used: 35808332934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)