BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0004.p
         (199 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL08585.1| putative CDP-alcohol phosphatidyltransferase [Des...   104   1e-21

>gb|AAL08585.1| putative CDP-alcohol phosphatidyltransferase [Desulfitobacterium
           dehalogenans]
          Length = 178

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 87/146 (59%)

Query: 54  LYLICGASDVLDGYVARKTNSTSSLGASLDSVADXXXXXXXXXXXXXXXQLSLWVICWIA 113
           +Y+ CG SD+LDG++ARKT +TS+LGA +DS+AD                    ++ W+ 
Sbjct: 32  IYIACGLSDMLDGFIARKTGTTSNLGAKIDSLADLVMVGILLVILLPIINPEAAILLWVI 91

Query: 114 AIALIRLGSLLVGYVKYHALSFLHTYANKATGLALFSFPFLYXXXXXXXXXXXXCGLASC 173
            I +IRL +++V  +KY++ + LHTY NKATGL LF FP L             C LAS 
Sbjct: 92  FIGVIRLAAMIVAQIKYNSFASLHTYGNKATGLVLFLFPLLLSFSHTDVLMYIICVLASI 151

Query: 174 SAIEELLINIKSKELLRDDAGWMFRK 199
           SAIEELLI++ S ELL +  G + RK
Sbjct: 152 SAIEELLIHLTSDELLLNRKGLLERK 177


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 198,040,782
Number of extensions: 4731779
Number of successful extensions: 11506
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11544
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 80
Effective length of database: 434,140,797
Effective search space: 34731263760
Effective search space used: 34731263760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)