BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0435.0014.p (139 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00037148.1| COG1917: Uncharacterized conserved protein, c... 206 1e-52 ref|NP_786215.1| unknown [Lactobacillus plantarum WCFS1] >gi|282... 180 1e-44 ref|NP_786351.1| unknown [Lactobacillus plantarum WCFS1] >gi|282... 179 2e-44 ref|NP_267690.1| hypothetical protein L178204 [Lactococcus lacti... 177 6e-44 ref|NP_734929.1| Unknown [Streptococcus agalactiae NEM316] >gi|2... 160 1e-38 >ref|ZP_00037148.1| COG1917: Uncharacterized conserved protein, contains double-stranded beta-helix domain [Enterococcus faecium] Length = 139 Score = 206 bits (524), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 92/126 (73%), Positives = 110/126 (87%) Query: 1 VAKHDEVKNGIIFPVGEKNEAFAQYFVGQSYLSTLVADPNVNVGVGNVTFEPGCRNNWHI 60 KH+E+ NG+IFP GEKNEA+AQ F GQSYL+ LV DP V+VGVGNV FEPGCRN+WH+ Sbjct: 2 TTKHEEIHNGVIFPAGEKNEAYAQVFTGQSYLNMLVNDPEVSVGVGNVIFEPGCRNHWHV 61 Query: 61 HRNGFQLLMVTGGEGWYQEEGKPAQFLKAGDVVVTQDGVKHWHGASKDSWFEHIAITAGR 120 H++G+Q+L+VTGGEGWYQEEGKPA+ L AGDVVVT G+KHWHGA+KDSWFEH+AITAG Sbjct: 62 HKDGYQILLVTGGEGWYQEEGKPARRLMAGDVVVTHKGIKHWHGATKDSWFEHLAITAGN 121 Query: 121 PEWLEP 126 E+LEP Sbjct: 122 SEFLEP 127 >ref|NP_786215.1| unknown [Lactobacillus plantarum WCFS1] emb|CAD65066.1| unknown [Lactobacillus plantarum WCFS1] Length = 132 Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 82/120 (68%), Positives = 92/120 (76%) Query: 7 VKNGIIFPVGEKNEAFAQYFVGQSYLSTLVADPNVNVGVGNVTFEPGCRNNWHIHRNGFQ 66 N +F +G KNEA+ QYF+GQSYL+ L D V+V V NVTFEPGCRNNWHIH NG+Q Sbjct: 4 TNNSGLFGLGVKNEAYQQYFIGQSYLNALAGDEQVDVNVSNVTFEPGCRNNWHIHHNGYQ 63 Query: 67 LLMVTGGEGWYQEEGKPAQFLKAGDVVVTQDGVKHWHGASKDSWFEHIAITAGRPEWLEP 126 +L+VT GEGWYQE GKPAQ L GDVV GVKHWHGA+KDSWF HIAIT G EWLEP Sbjct: 64 ILLVTSGEGWYQEAGKPAQLLHPGDVVTIHPGVKHWHGATKDSWFAHIAITKGTSEWLEP 123 >ref|NP_786351.1| unknown [Lactobacillus plantarum WCFS1] emb|CAD65211.1| unknown [Lactobacillus plantarum WCFS1] Length = 136 Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 81/115 (70%), Positives = 93/115 (80%) Query: 12 IFPVGEKNEAFAQYFVGQSYLSTLVADPNVNVGVGNVTFEPGCRNNWHIHRNGFQLLMVT 71 IF +G+ N AF QYF G+SY + LV D VNV V NV+FEPG RNNWHIH NG+Q+L+VT Sbjct: 12 IFAMGDLNVAFQQYFTGKSYHNALVKDEQVNVTVSNVSFEPGARNNWHIHHNGYQILLVT 71 Query: 72 GGEGWYQEEGKPAQFLKAGDVVVTQDGVKHWHGASKDSWFEHIAITAGRPEWLEP 126 GGEGWYQE G+PAQ L GDVV+T DG+KHWHGA+KDSWF HIAITAG PEWL P Sbjct: 72 GGEGWYQEAGQPAQRLHPGDVVITHDGIKHWHGATKDSWFSHIAITAGTPEWLSP 126 >ref|NP_267690.1| hypothetical protein L178204 [Lactococcus lactis subsp. lactis] pir||F86816 hypothetical protein yphH [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK05632.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis] Length = 133 Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 81/130 (62%), Positives = 99/130 (76%), Gaps = 1/130 (0%) Query: 6 EVKNGIIFPVGEKNEAFAQYFVGQSYLSTLVADPNVNVGVGNVTFEPGCRNNWHIHRNGF 65 E++N +IFP GEKN + YF GQSYL ++AD ++ GVGNVTFEPGCRN+WHIH++G+ Sbjct: 5 ELENALIFPQGEKN-PYGAYFTGQSYLEGMIADKDLPFGVGNVTFEPGCRNHWHIHKDGY 63 Query: 66 QLLMVTGGEGWYQEEGKPAQFLKAGDVVVTQDGVKHWHGASKDSWFEHIAITAGRPEWLE 125 Q+L+VT GEGWYQEEGK AQ L AGD +VT GVKHWHGA+KDSWF H+AITAG WLE Sbjct: 64 QVLLVTAGEGWYQEEGKEAQLLHAGDTIVTHAGVKHWHGATKDSWFSHVAITAGEAVWLE 123 Query: 126 PXXXXPTMNI 135 N+ Sbjct: 124 EVSDEQYENL 133 >ref|NP_734929.1| Unknown [Streptococcus agalactiae NEM316] emb|CAD46105.1| Unknown [Streptococcus agalactiae NEM316] Length = 131 Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 74/114 (64%), Positives = 89/114 (78%), Gaps = 1/114 (0%) Query: 12 IFPVGEKNEAFAQYFVGQSYLSTLVADPNVNVGVGNVTFEPGCRNNWHIHRNGFQLLMVT 71 IFP GEKN + ++F+GQSYL+ L P+ NV VGNVTFE GCRNNWH+H +G+Q+L+VT Sbjct: 8 IFPKGEKN-PYGEFFIGQSYLAALAKSPDGNVSVGNVTFEAGCRNNWHVHLDGYQILLVT 66 Query: 72 GGEGWYQEEGKPAQFLKAGDVVVTQDGVKHWHGASKDSWFEHIAITAGRPEWLE 125 G GWYQEEGK A LK GDV+VT GV+HWHGA KDS F HIAITAG+ E+ E Sbjct: 67 EGSGWYQEEGKEAVSLKPGDVIVTDKGVRHWHGAKKDSEFAHIAITAGKSEFYE 120 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 232,424,043 Number of extensions: 9634491 Number of successful extensions: 17071 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 17011 Number of HSP's successfully gapped: 65 Length of query: 139 Length of database: 757,237,578 Length adjustment: 100 Effective length of query: 39 Effective length of database: 485,727,678 Effective search space: 18943379442 Effective search space used: 18943379442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)