BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0435.0002.p
         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_435539.1| conserved hypothetical protein [Sinorhizobium m...   170   7e-42
ref|NP_299025.1| hypothetical protein [Xylella fastidiosa 9a5c] ...   160   8e-39
ref|NP_785476.1| unknown [Lactobacillus plantarum WCFS1] >gi|282...   134   5e-31
ref|ZP_00018278.1| hypothetical protein [Chloroflexus aurantiacus]     68   6e-11

>ref|NP_435539.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 pir||E95298 conserved hypothetical protein SMa0561 [imported] - Sinorhizobium
           meliloti (strain 1021) magaplasmid pSymA
 gb|AAK64951.1| conserved hypothetical protein [Sinorhizobium meliloti]
          Length = 127

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 95/123 (77%)

Query: 1   MGTWSNEELRKIRDADDLHISPFREDGVTYGTPTWIWSVVVESSIYVRAYYGQNSRWYQA 60
           M  W  +ELR+I ++DDLHI+PFRE+G TYGT TWIWSVVV+  +YVR Y GQ SRWYQA
Sbjct: 4   MNIWPTDELRQIAESDDLHIAPFRENGRTYGTLTWIWSVVVDGELYVRGYNGQQSRWYQA 63

Query: 61  AVRQKAGRITVAGMAFEVSFEPIEGQMSDVIDNAYRTKYKGSPYLDAMISTRARSATVKV 120
           A+RQKAGRIT AGM  EVSFEP+EG ++D ID  YR KY  S YL  MI  RAR+ATVK+
Sbjct: 64  AIRQKAGRITAAGMTKEVSFEPVEGAINDQIDEGYRRKYATSRYLAPMIGERARAATVKI 123

Query: 121 LPR 123
            P+
Sbjct: 124 TPK 126


>ref|NP_299025.1| hypothetical protein [Xylella fastidiosa 9a5c]
 pir||F82642 hypothetical protein XF1736 [imported] - Xylella fastidiosa
           (strain 9a5c)
 gb|AAF84545.1| hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 131

 Score =  160 bits (405), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 90/119 (75%)

Query: 4   WSNEELRKIRDADDLHISPFREDGVTYGTPTWIWSVVVESSIYVRAYYGQNSRWYQAAVR 63
           W+ ++L +I  ADDL ISPFREDG TYGTPTWIW V V+  +YVR Y G  SRWYQAAV+
Sbjct: 7   WNQDQLDRIVAADDLRISPFREDGKTYGTPTWIWCVQVDGDLYVRGYSGTASRWYQAAVK 66

Query: 64  QKAGRITVAGMAFEVSFEPIEGQMSDVIDNAYRTKYKGSPYLDAMISTRARSATVKVLP 122
           Q+AGRIT AG  F V+FEP+ G ++D ID AY+ KY  S YL  MIS RAR+ATVK++P
Sbjct: 67  QRAGRITAAGSTFNVTFEPVSGAINDAIDAAYKAKYSSSQYLRPMISERARAATVKIVP 125


>ref|NP_785476.1| unknown [Lactobacillus plantarum WCFS1]
 emb|CAD64325.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 144

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 4   WSNEELRKIRDADDLHISPFREDGVTYGTPTWIWSVVVESSIYVRAYYGQNSRWYQAAVR 63
           WS  +L     ADD  +SPF  DG TYGTPTWIWSVVV   +++RA+ G  SRWY++AV 
Sbjct: 18  WSRAQLAAFSTADDFQVSPFYSDGQTYGTPTWIWSVVVGQQLFIRAWNGPRSRWYRSAVT 77

Query: 64  QKAGRITVAGMAFEVSFEPI-EGQMSDVIDNAYRTKYKGSPYLDAMISTRARSATVKVLP 122
           Q+AGRI +A     V+F PI + Q+++ ID AYR KY GSPYL  M+++  R ATV+V+P
Sbjct: 78  QRAGRIHLAESNHLVNFVPICDEQLNNQIDQAYRQKYAGSPYLMPMLASGPRQATVQVMP 137

Query: 123 RMTR 126
           R+++
Sbjct: 138 RISK 141


>ref|ZP_00018278.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 140

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 1   MGTWSNEELRKIRDADDLHISPFREDGVTYGTPTWIWSVVVESSIYVRAYYGQNSRWYQA 60
           M  W  E++  I ++ ++ ++  R DG T   P  IW V V + ++VR++ GQ   W++ 
Sbjct: 16  MSVWKPEDIDVIGNSMEVRVAALRRDG-TLQRPVTIWIVRVGNELFVRSWRGQKGEWFRD 74

Query: 61  AVRQKAGRITVAGMAFEVSF-EPIEGQMSDVIDNAYRTKYKG-SPYLDAMISTRARSATV 118
           A  Q  GR+    +  +V F    + +++D ID  YRTKY+    Y+  MI    R+ T+
Sbjct: 75  AQAQGRGRLWAGSIERDVCFVMETDPELNDQIDAVYRTKYRHFMQYVIPMIRPEVRTTTL 134

Query: 119 KVLP 122
           K++P
Sbjct: 135 KLMP 138


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 184,586,648
Number of extensions: 6588162
Number of successful extensions: 13167
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 13164
Number of HSP's successfully gapped: 5
Length of query: 127
Length of database: 757,237,578
Length adjustment: 90
Effective length of query: 37
Effective length of database: 512,878,668
Effective search space: 18976510716
Effective search space used: 18976510716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)