BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0020.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA69873.1| succinate dehydrogenase subunit B [Paenibacillus... 474 e-133 ref|NP_243957.1| succinate dehydrogenase iron-sulfur protein [Ba... 416 e-115 ref|NP_693033.1| succinate dehydrogenase iron-sulfur protein [Oc... 405 e-112 ref|NP_390721.1| succinate dehydrogenase (iron-sulfur protein) [... 404 e-112 ref|NP_980936.1| succinate dehydrogenase, iron-sulfur protein [B... 399 e-110 >emb|CAA69873.1| succinate dehydrogenase subunit B [Paenibacillus macerans] Length = 261 Score = 474 bits (1220), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/257 (88%), Positives = 237/257 (92%), Gaps = 5/257 (1%) Query: 1 MAETAAA-----PKNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAK 55 MAET AA K VKF+ITRQD+P++ PYTEEFEL YRP MNVISALMEIQRNPVN K Sbjct: 3 MAETEAAVKQKSGKKVKFIITRQDDPNSQPYTEEFELDYRPNMNVISALMEIQRNPVNQK 62 Query: 56 GDSTVPVCWESNCLEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVI 115 G+ T PVCWESNCLEEVCGACSMVINGKPRQACAALID LEQPVRIEPMRTFPVVRDLVI Sbjct: 63 GEHTAPVCWESNCLEEVCGACSMVINGKPRQACAALIDQLEQPVRIEPMRTFPVVRDLVI 122 Query: 116 DRSRMFGALKRVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEK 175 DRSRMF ALKRVKAWIPIDGTYDLGPGPRM EKKRQWAYELSKCMTCGVCLEACPNVNEK Sbjct: 123 DRSRMFNALKRVKAWIPIDGTYDLGPGPRMPEKKRQWAYELSKCMTCGVCLEACPNVNEK 182 Query: 176 TNFIGPAAISQVRLFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTS 235 T+FIGPAAISQVRLFNAHPTG MNADERLDALMEDGGI+GCGNSQNCVRACPKGIPLTTS Sbjct: 183 TDFIGPAAISQVRLFNAHPTGAMNADERLDALMEDGGIEGCGNSQNCVRACPKGIPLTTS 242 Query: 236 IAEINKQTTKHMFKRWL 252 IAE+N+ TTK MFKRWL Sbjct: 243 IAEMNRDTTKRMFKRWL 259 >ref|NP_243957.1| succinate dehydrogenase iron-sulfur protein [Bacillus halodurans] pir||C84036 succinate dehydrogenase iron-sulfur protein sdhB [imported] - Bacillus halodurans (strain C-125) dbj|BAB06810.1| succinate dehydrogenase iron-sulfur protein [Bacillus halodurans] Length = 251 Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust. Identities = 187/243 (76%), Positives = 216/243 (88%) Query: 11 VKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWESNCLE 70 V+F+ITRQD+PD++PY EEF++ YR MNVISALMEI+RNPVN+KG+++ PV WE NCLE Sbjct: 6 VRFIITRQDDPDSSPYEEEFQVPYRQNMNVISALMEIRRNPVNSKGETSTPVAWEMNCLE 65 Query: 71 EVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALKRVKAW 130 EVCGACSMVINGKPRQ+C AL+D LEQP+R+EPM+TFPVVRDLVIDRSRMF +LK+VKAW Sbjct: 66 EVCGACSMVINGKPRQSCTALVDQLEQPIRLEPMKTFPVVRDLVIDRSRMFDSLKKVKAW 125 Query: 131 IPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAISQVRLF 190 IPIDGTYDLGPGPRMAE KRQWAYELSKCMTCGVCLEACPNVN K+ FIGPA +SQVRLF Sbjct: 126 IPIDGTYDLGPGPRMAESKRQWAYELSKCMTCGVCLEACPNVNSKSEFIGPAPLSQVRLF 185 Query: 191 NAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTKHMFKR 250 NAHPTGEMN +ERL A+M DGG+ CGNSQNCV++CPKGIPLTTSIA +N+ T FK Sbjct: 186 NAHPTGEMNKEERLQAIMGDGGLANCGNSQNCVQSCPKGIPLTTSIAALNRSATLQSFKN 245 Query: 251 WLG 253 + G Sbjct: 246 FFG 248 >ref|NP_693033.1| succinate dehydrogenase iron-sulfur protein [Oceanobacillus iheyensis HTE831] dbj|BAC14068.1| succinate dehydrogenase iron-sulfur protein [Oceanobacillus iheyensis HTE831] Length = 254 Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust. Identities = 186/248 (75%), Positives = 211/248 (85%) Query: 6 AAPKNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWE 65 A V F+ITRQD P++ PY E FE+ YR MNVISALMEI++NPVN KG++T PV W+ Sbjct: 2 AEQSKVTFIITRQDGPESTPYEETFEIPYRQNMNVISALMEIRQNPVNNKGENTTPVMWD 61 Query: 66 SNCLEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALK 125 NCLEEVCGACSMVING RQ+CAAL+D LEQP+R+EPM TFPVVRDL++DR RMF ALK Sbjct: 62 MNCLEEVCGACSMVINGTARQSCAALVDQLEQPIRLEPMSTFPVVRDLIVDRERMFDALK 121 Query: 126 RVKAWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAIS 185 +VKAWIPIDGT+DLGPGPRM E KRQWAYELSKCMTCGVCLEACPNVN+ +NFIGPAAIS Sbjct: 122 QVKAWIPIDGTHDLGPGPRMPENKRQWAYELSKCMTCGVCLEACPNVNDNSNFIGPAAIS 181 Query: 186 QVRLFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTK 245 Q RLFNAHPTGEMNA +RL+ LMEDGGIDGCGNSQNCV+ CPKGIPLTTSIA +N+ T Sbjct: 182 QARLFNAHPTGEMNASDRLNGLMEDGGIDGCGNSQNCVQVCPKGIPLTTSIAAMNRATNI 241 Query: 246 HMFKRWLG 253 FK + G Sbjct: 242 QAFKNFFG 249 >ref|NP_390721.1| succinate dehydrogenase (iron-sulfur protein) [Bacillus subtilis] sp|P08066|DHSB_BACSU Succinate dehydrogenase iron-sulfur protein pir||B27763 succinate dehydrogenase (EC 1.3.99.1) iron-sulfur protein sdhB - Bacillus subtilis gb|AAA22747.1| iron-sulfur protein emb|CAA99548.1| iron-sulphur subunit of succinate dehydrogenase subunit [Bacillus subtilis] emb|CAB14803.1| succinate dehydrogenase (iron-sulfur protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 253 Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust. Identities = 181/245 (73%), Positives = 212/245 (86%) Query: 9 KNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWESNC 68 K ++F+ITRQD D+ PY EEFE+ YRP +NVISALMEI+RNPVN KG+ T PV W+ NC Sbjct: 5 KTIRFIITRQDTADSTPYDEEFEIPYRPNLNVISALMEIRRNPVNVKGEKTTPVTWDMNC 64 Query: 69 LEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALKRVK 128 LEEVCGACSMVINGKPRQ+C ALID LEQP+R++PM+TFPVVRDL +DRSRMF +LK+VK Sbjct: 65 LEEVCGACSMVINGKPRQSCTALIDQLEQPIRLKPMKTFPVVRDLQVDRSRMFDSLKKVK 124 Query: 129 AWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAISQVR 188 AWIPIDGTYDLGPGPRM EK+RQWAYELSKCMTCGVCLEACPNVN K+ F+GPA +SQVR Sbjct: 125 AWIPIDGTYDLGPGPRMPEKRRQWAYELSKCMTCGVCLEACPNVNSKSKFMGPAPMSQVR 184 Query: 189 LFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTKHMF 248 LFNAHPTG MN ERL+ALM++GG+ CGNSQNCV++CPKGIPLTTSIA +N+ T F Sbjct: 185 LFNAHPTGAMNKSERLEALMDEGGLADCGNSQNCVQSCPKGIPLTTSIAALNRDTNLQAF 244 Query: 249 KRWLG 253 + + G Sbjct: 245 RNFFG 249 >ref|NP_980936.1| succinate dehydrogenase, iron-sulfur protein [Bacillus cereus ATCC 10987] gb|AAS43544.1| succinate dehydrogenase, iron-sulfur protein [Bacillus cereus ATCC 10987] Length = 253 Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust. Identities = 179/245 (73%), Positives = 211/245 (86%) Query: 9 KNVKFVITRQDEPDTAPYTEEFELAYRPGMNVISALMEIQRNPVNAKGDSTVPVCWESNC 68 K ++ +ITRQD PD + +EFE+ YRP MN+ISALMEI+RNPV+AKG+ T P+ W+ NC Sbjct: 4 KTIRLIITRQDGPDAQAFDQEFEIPYRPNMNIISALMEIRRNPVDAKGNKTTPIAWDMNC 63 Query: 69 LEEVCGACSMVINGKPRQACAALIDNLEQPVRIEPMRTFPVVRDLVIDRSRMFGALKRVK 128 LEEVCGACSMVINGKPRQ+C ALID LEQP+R++PM+TFPVVRDL +DRSRMF ALKRVK Sbjct: 64 LEEVCGACSMVINGKPRQSCTALIDQLEQPIRLKPMKTFPVVRDLQVDRSRMFNALKRVK 123 Query: 129 AWIPIDGTYDLGPGPRMAEKKRQWAYELSKCMTCGVCLEACPNVNEKTNFIGPAAISQVR 188 AWIPIDGTYDLGPGPRM EKKRQWAYELSKCMTCGVCLE+CPNVN K++FIGPA +SQ R Sbjct: 124 AWIPIDGTYDLGPGPRMPEKKRQWAYELSKCMTCGVCLESCPNVNSKSDFIGPAPLSQAR 183 Query: 189 LFNAHPTGEMNADERLDALMEDGGIDGCGNSQNCVRACPKGIPLTTSIAEINKQTTKHMF 248 LFN+HPTGEM+ +RL A+M DGG+ CGNSQNCV++CPKGIPLTTSIA +N+ TT F Sbjct: 184 LFNSHPTGEMHKADRLRAIMGDGGLANCGNSQNCVQSCPKGIPLTTSIAALNRDTTIQSF 243 Query: 249 KRWLG 253 K + G Sbjct: 244 KDFFG 248 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,748,722 Number of extensions: 15668629 Number of successful extensions: 39258 Number of sequences better than 1.0e-05: 616 Number of HSP's gapped: 38111 Number of HSP's successfully gapped: 617 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)