BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0019.p (580 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA69872.1| succinate dehydrogenase subunit A [Paenibacillus... 1092 0.0 ref|NP_243958.1| succinate dehydrogenase flavoprotein subunit; s... 978 0.0 ref|NP_846960.1| succinate dehydrogenase, flavoprotein subunit [... 973 0.0 ref|NP_834226.1| Succinate dehydrogenase flavoprotein subunit [B... 973 0.0 ref|NP_980937.1| succinate dehydrogenase, flavoprotein subunit [... 972 0.0 >emb|CAA69872.1| succinate dehydrogenase subunit A [Paenibacillus macerans] Length = 581 Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/580 (88%), Positives = 546/580 (94%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 MA +I+VGGGLAGLMATIK+AE+G VHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MAKQSVIVVGGGLAGLMATIKSAEAGVPVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTAFAGATTGQQLLYALDEQVRR EA G+VTK ENWEFLSV+LDD+ VCRGI+AQNL+ Sbjct: 121 HHRTAFAGATTGQQLLYALDEQVRRHEAAGLVTKYENWEFLSVVLDDDGVCRGITAQNLR 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 +MEI TF +DAVILA+GGPGIIFGKTTNSVINTGTAASAVYQQGV+YANGEFIQIHPTAI Sbjct: 181 SMEIVTFASDAVILATGGPGIIFGKTTNSVINTGTAASAVYQQGVHYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCVDQ Sbjct: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDQK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV Sbjct: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMV+GPKAVEYI+GLKKS DI Sbjct: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVAGPKAVEYIRGLKKSADDI 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 VFD + K Q DK+E LL M+G+ENAYV+HKELGEWMT NMTVVR N +L ATI KIK Sbjct: 421 RPDVFDRYRKAQEDKFEGLLNMNGSENAYVLHKELGEWMTDNMTVVRYNDRLEATINKIK 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 ELKERY++IN+NDTSRWNN G AFTRQLWNMLEL+EAMTLGALLRNESRGAHYKP+FP R Sbjct: 481 ELKERYKKININDTSRWNNAGAAFTRQLWNMLELAEAMTLGALLRNESRGAHYKPDFPNR 540 Query: 541 NDEEFLKTTKAAWTADGPQISYEEVDVSLIPPRVRDYSKD 580 NDEEFLKTTKA WT DGPQISYE+VDVSLIPPR+RDYSKD Sbjct: 541 NDEEFLKTTKATWTPDGPQISYEDVDVSLIPPRIRDYSKD 580 >ref|NP_243958.1| succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase flavoprotein [Bacillus halodurans] pir||D84036 succinate dehydrogenase flavoprotein sdhA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06811.1| succinate dehydrogenase flavoprotein subunit [Bacillus halodurans] Length = 589 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/581 (78%), Positives = 516/581 (88%), Gaps = 2/581 (0%) Query: 1 MASADIIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 M+ +I+VGGGLAGLMATIK AE+G V LFSLVPVKRSHSVCAQGGINGAVNTKGEGD Sbjct: 1 MSKGKVIVVGGGLAGLMATIKVAEAGVPVELFSLVPVKRSHSVCAQGGINGAVNTKGEGD 60 Query: 61 SPWEHFDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTK 120 SPWEHFDDTVYGGDFLANQPPVKAMC+AAPGIIHLMDRMGVMFNRT EGLLDFRRFGGT+ Sbjct: 61 SPWEHFDDTVYGGDFLANQPPVKAMCDAAPGIIHLMDRMGVMFNRTAEGLLDFRRFGGTQ 120 Query: 121 RHRTAFAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLK 180 HRTAFAGATTGQQLLYALDEQVRR E G+VTK E WEF+S I+DDE +CRGI+AQNLK Sbjct: 121 HHRTAFAGATTGQQLLYALDEQVRRHETSGLVTKYEGWEFISAIIDDEGICRGITAQNLK 180 Query: 181 TMEIQTFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAI 240 T E Q+F ADAVI+A+GGPGIIFGK+TNSVINTG AA+ +Y+QGVYYANGEFIQIHPTAI Sbjct: 181 TSEFQSFSADAVIMATGGPGIIFGKSTNSVINTGYAAAKLYEQGVYYANGEFIQIHPTAI 240 Query: 241 PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQG 300 PGDDKLRLMSESARGEGGR+WTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCVD Sbjct: 241 PGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFHVCVDLK 300 Query: 301 LGINGENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWV 360 LGINGENMVYLDLSHKDPKELD+KLGGIIEIYEKFMGDDPRK+PMKIFPAVHYSMGGMW+ Sbjct: 301 LGINGENMVYLDLSHKDPKELDIKLGGIIEIYEKFMGDDPRKVPMKIFPAVHYSMGGMWI 360 Query: 361 DYNQMTNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDI 420 DY+QMTNIPGLFAAGEC+Y HGANRLGANSL+SAI+GGMV+GPKAVEY+ GL+KS + + Sbjct: 361 DYDQMTNIPGLFAAGECDYSQHGANRLGANSLLSAIFGGMVAGPKAVEYMNGLEKSAESM 420 Query: 421 SSTVFDSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIK 480 S++F+ K + +K++ +L M G ENAYV+HKELGEWMT N+TVVR N KL T KI+ Sbjct: 421 PSSLFEGELKKEQEKFDDILKMDGKENAYVLHKELGEWMTDNVTVVRYNDKLLKTDEKIQ 480 Query: 481 ELKERYRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPAR 540 EL ERY+ I++NDT++W+NQG +FTRQL ML+L+ +TLGA RNESRGAHYKP+FP R Sbjct: 481 ELMERYKNIDINDTAKWSNQGASFTRQLDGMLKLARVITLGAYNRNESRGAHYKPDFPER 540 Query: 541 NDEEFLKTTKAAWTAD--GPQISYEEVDVSLIPPRVRDYSK 579 NDEEFLKTTKA + + P+ YEEVDVSLI PR RDYS+ Sbjct: 541 NDEEFLKTTKAKFNPETLAPEFEYEEVDVSLIEPRKRDYSQ 581 >ref|NP_846960.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis str. Ames] gb|AAP28446.1| succinate dehydrogenase, flavoprotein subunit [Bacillus anthracis str. Ames] Length = 597 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/575 (79%), Positives = 510/575 (88%), Gaps = 2/575 (0%) Query: 6 IIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65 +I+VGGGLAGLMATIKAAE+G +V LFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPW H Sbjct: 5 LIVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIH 64 Query: 66 FDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRHRTA 125 FDDT+YGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRT EGLLDFRRFGGT+ HRTA Sbjct: 65 FDDTIYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTEEGLLDFRRFGGTQHHRTA 124 Query: 126 FAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLKTMEIQ 185 FAGATTGQQLLYALDEQVRR E G+VTK E W+FL ++DDE VCRGI AQ+L+TMEI+ Sbjct: 125 FAGATTGQQLLYALDEQVRRHEVAGLVTKYEGWDFLRAVVDDEGVCRGIVAQDLQTMEIK 184 Query: 186 TFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAIPGDDK 245 +F ADAVI+A+GGPGIIFGK+TNS+INTGTAASAVYQQG YYANGEFIQIHPTAIPGDDK Sbjct: 185 SFGADAVIMATGGPGIIFGKSTNSIINTGTAASAVYQQGAYYANGEFIQIHPTAIPGDDK 244 Query: 246 LRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQGLGING 305 LRLMSESARGEGGR+WTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCV+Q LGING Sbjct: 245 LRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGING 304 Query: 306 ENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDYNQM 365 ENMVYLDLSHKDPKELD+KLGGIIEIYEKF GDDPRK+PMKIFPAVHYSMGG+WVDY QM Sbjct: 305 ENMVYLDLSHKDPKELDIKLGGIIEIYEKFTGDDPRKLPMKIFPAVHYSMGGLWVDYKQM 364 Query: 366 TNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDISSTVF 425 TNIPGLFAAGEC+Y HG NRLGANSL+SAIYGGMV+GP A+EY+KGL KS +SSTV+ Sbjct: 365 TNIPGLFAAGECDYSMHGGNRLGANSLLSAIYGGMVAGPNAIEYMKGLSKSSDAVSSTVY 424 Query: 426 DSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIKELKER 485 + +T+K+ ++L + G ENAYV+HKELGEWMT N+TVVREN KL T KI+EL R Sbjct: 425 EQNELIETEKFNNILTLDGNENAYVLHKELGEWMTDNVTVVRENKKLLETDAKIEELMAR 484 Query: 486 YRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPARNDEEF 545 Y+RIN+NDT+RW+NQG +FTRQL NM EL+ +T+GA RNESRGAHYKPEFP R+D F Sbjct: 485 YKRININDTARWSNQGASFTRQLANMFELARVITIGAYNRNESRGAHYKPEFPNRDDANF 544 Query: 546 LKTTKAAWTADG--PQISYEEVDVSLIPPRVRDYS 578 LKTT A + +G P YE+VD+SLI PR RDYS Sbjct: 545 LKTTMAKFEGEGNAPAFHYEDVDISLIKPRKRDYS 579 >ref|NP_834226.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus ATCC 14579] gb|AAP11427.1| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus ATCC 14579] Length = 597 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/575 (79%), Positives = 509/575 (88%), Gaps = 2/575 (0%) Query: 6 IIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65 +I+VGGGLAGLMATIKAAE+G +V LFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPW H Sbjct: 5 LIVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIH 64 Query: 66 FDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRHRTA 125 FDDT+YGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRT EGLLDFRRFGGT+ HRTA Sbjct: 65 FDDTIYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTEEGLLDFRRFGGTQHHRTA 124 Query: 126 FAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLKTMEIQ 185 FAGATTGQQLLYALDEQVRR E G+VTK E W+FL ++DDE VCRGI AQ+L+TMEI+ Sbjct: 125 FAGATTGQQLLYALDEQVRRHEVAGLVTKYEGWDFLRAVVDDEGVCRGIVAQDLQTMEIR 184 Query: 186 TFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAIPGDDK 245 +F ADAVI+A+GGPGIIFGK+TNS+INTGTAASAVYQQG YYANGEFIQIHPTAIPGDDK Sbjct: 185 SFGADAVIMATGGPGIIFGKSTNSIINTGTAASAVYQQGAYYANGEFIQIHPTAIPGDDK 244 Query: 246 LRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQGLGING 305 LRLMSESARGEGGR+WTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCV+Q LGING Sbjct: 245 LRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGING 304 Query: 306 ENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDYNQM 365 ENMVYLDLSHKDPKELD+KLGGIIEIYEKF GDDPRK+PMKIFPAVHYSMGG+WVDY QM Sbjct: 305 ENMVYLDLSHKDPKELDIKLGGIIEIYEKFTGDDPRKLPMKIFPAVHYSMGGLWVDYKQM 364 Query: 366 TNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDISSTVF 425 TNIPGLFAAGEC+Y HG NRLGANSL+SAIYGGMV+GP A EY+KGL KS +SSTV+ Sbjct: 365 TNIPGLFAAGECDYSMHGGNRLGANSLLSAIYGGMVAGPNATEYMKGLSKSSDAVSSTVY 424 Query: 426 DSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIKELKER 485 + +T+K+ ++L M G ENAYV+HKELGEWMT N+TVVREN KL T KI+EL R Sbjct: 425 EQNELIETEKFNNILTMDGNENAYVLHKELGEWMTDNVTVVRENKKLLETDAKIEELMAR 484 Query: 486 YRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPARNDEEF 545 Y+RIN+NDT+RW+NQG +FTRQL NM EL+ +T+GA RNESRGAHYKPEFP R+D F Sbjct: 485 YKRININDTARWSNQGASFTRQLANMFELARVITIGAYNRNESRGAHYKPEFPNRDDANF 544 Query: 546 LKTTKAAWTADG--PQISYEEVDVSLIPPRVRDYS 578 LKTT A + +G P YE+VD+SLI PR RDYS Sbjct: 545 LKTTMAKFEGEGNAPAFHYEDVDISLIKPRKRDYS 579 >ref|NP_980937.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus ATCC 10987] gb|AAS43545.1| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus ATCC 10987] Length = 597 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/575 (78%), Positives = 510/575 (88%), Gaps = 2/575 (0%) Query: 6 IIIVGGGLAGLMATIKAAESGAHVHLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWEH 65 +I+VGGGLAGLMATIKAAE+G +V LFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPW H Sbjct: 5 LIVVGGGLAGLMATIKAAEAGVNVELFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIH 64 Query: 66 FDDTVYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTPEGLLDFRRFGGTKRHRTA 125 FDDT+YGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRT EGLLDFRRFGGT+ HRTA Sbjct: 65 FDDTIYGGDFLANQPPVKAMCEAAPGIIHLMDRMGVMFNRTEEGLLDFRRFGGTQHHRTA 124 Query: 126 FAGATTGQQLLYALDEQVRRWEAEGMVTKSENWEFLSVILDDERVCRGISAQNLKTMEIQ 185 FAGATTGQQLLYALDEQVRR E G+VTK E W+FL ++DDE VCRGI AQ+L+TMEI+ Sbjct: 125 FAGATTGQQLLYALDEQVRRHEVAGLVTKYEGWDFLRAVIDDEGVCRGIVAQDLQTMEIR 184 Query: 186 TFPADAVILASGGPGIIFGKTTNSVINTGTAASAVYQQGVYYANGEFIQIHPTAIPGDDK 245 +F ADAVI+A+GGPGIIFGK+TNS+INTGTAASAVYQQG YYANGEFIQIHPTAIPGDDK Sbjct: 185 SFRADAVIMATGGPGIIFGKSTNSIINTGTAASAVYQQGAYYANGEFIQIHPTAIPGDDK 244 Query: 246 LRLMSESARGEGGRIWTYKDGKPWYFLEEKYPSYGNLVPRDIATREIFNVCVDQGLGING 305 LRLMSESARGEGGR+WTYKDGKPWYFLEEKYP+YGNLVPRDIATREIF+VCV+Q LGING Sbjct: 245 LRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGING 304 Query: 306 ENMVYLDLSHKDPKELDVKLGGIIEIYEKFMGDDPRKIPMKIFPAVHYSMGGMWVDYNQM 365 ENMVYLDLSHKDPKELD+KLGGIIEIYEKF GDDPRK+PMKIFPAVHYSMGG+WVDY QM Sbjct: 305 ENMVYLDLSHKDPKELDIKLGGIIEIYEKFTGDDPRKLPMKIFPAVHYSMGGLWVDYKQM 364 Query: 366 TNIPGLFAAGECEYQYHGANRLGANSLVSAIYGGMVSGPKAVEYIKGLKKSVQDISSTVF 425 T+IPGLFAAGEC+Y HG NRLGANSL+SAIYGGMV+GP A+EY+KGL KS +SSTV+ Sbjct: 365 TSIPGLFAAGECDYSMHGGNRLGANSLLSAIYGGMVAGPNAIEYMKGLSKSSDAVSSTVY 424 Query: 426 DSFHKTQTDKYESLLAMSGTENAYVIHKELGEWMTANMTVVRENTKLTATIGKIKELKER 485 + +T+K+ ++L + G ENAYV+HKELGEWMT N+TVVREN KL T KI+EL R Sbjct: 425 EQNELIETEKFNNILTLDGNENAYVLHKELGEWMTDNVTVVRENKKLLETDAKIEELMAR 484 Query: 486 YRRINMNDTSRWNNQGVAFTRQLWNMLELSEAMTLGALLRNESRGAHYKPEFPARNDEEF 545 Y+RIN+NDT+RW+NQG +FTRQL NM EL+ +T+GA RNESRGAHYKPEFP R+D F Sbjct: 485 YKRININDTARWSNQGASFTRQLANMFELARVITIGAYNRNESRGAHYKPEFPNRDDANF 544 Query: 546 LKTTKAAWTADG--PQISYEEVDVSLIPPRVRDYS 578 LKTT A + +G P YE+VD+SLI PR RDYS Sbjct: 545 LKTTMAKFEGEGNAPAFHYEDVDISLIKPRKRDYS 579 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 905,541,010 Number of extensions: 39858455 Number of successful extensions: 118117 Number of sequences better than 1.0e-05: 1365 Number of HSP's gapped: 113777 Number of HSP's successfully gapped: 1384 Length of query: 580 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 449 Effective length of database: 401,559,609 Effective search space: 180300264441 Effective search space used: 180300264441 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)