BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0018.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA69871.1| succinate dehydrogenase subunit C [Paenibacillus... 337 9e-92 ref|NP_693035.1| succinate dehydrogenase cytochrome b-556 subuni... 200 2e-50 ref|NP_243959.1| succinate dehydrogenase cytochrome b-558; succi... 198 9e-50 ref|NP_390723.1| succinate dehydrogenase (cytochrome b558 subuni... 194 1e-48 ref|NP_980938.1| succinate dehydrogenase, cytochrome b558 subuni... 188 8e-47 >emb|CAA69871.1| succinate dehydrogenase subunit C [Paenibacillus macerans] Length = 223 Score = 337 bits (865), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 161/222 (72%), Positives = 193/222 (86%), Gaps = 1/222 (0%) Query: 14 MRGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFG 73 M+GFYSRK+HSLLGVIPLGFF LEHM+TNFSAVEGG+ GF +SV +LNSLPLV LE+FG Sbjct: 1 MKGFYSRKLHSLLGVIPLGFFILEHMITNFSAVEGGSQGFKESVAFLNSLPLVLVLEIFG 60 Query: 74 IWLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVA 133 IWLPLLYHGVYGLYIA+Q+KPN RF ERN RY LQRISGVI F F++WHL++TRVQVA Sbjct: 61 IWLPLLYHGVYGLYIAFQAKPNNGRFPTERNLRYLLQRISGVIVFAFVIWHLWETRVQVA 120 Query: 134 LGNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVS 193 LGNV HEELGGVMH+IVTQP+ ++Y+I V+AA FHFANGLWSF++SWGITVGPR+QRVS Sbjct: 121 LGNVTHEELGGVMHSIVTQPVFFLLYLISVVAASFHFANGLWSFMVSWGITVGPRAQRVS 180 Query: 194 SVICLGLFVIVSFMFLFSLVTFRDSEFQAAASA-VQSLRSLI 234 S IC+GLFVIV+ MF+ SL FR +EFQA +A ++S ++L+ Sbjct: 181 SYICMGLFVIVALMFVGSLFAFRGAEFQAEGTALLESAKALL 222 >ref|NP_693035.1| succinate dehydrogenase cytochrome b-556 subunit [Oceanobacillus iheyensis HTE831] dbj|BAC14070.1| succinate dehydrogenase cytochrome b-556 subunit [Oceanobacillus iheyensis HTE831] Length = 206 Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 142/201 (70%), Gaps = 3/201 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R F+ R++HSLLGV+P+G F ++H+L N AV G S F + ++ +LP V LE+F I Sbjct: 5 REFFYRRLHSLLGVVPIGIFLVQHLLINHFAVYGEES-FNTAAGFMKNLPFVLLLEIFVI 63 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 +LP+L+H + G+YI + +K N ++ RNW + QRI+G+I +FI WH+++TRVQ+ L Sbjct: 64 YLPILFHAILGVYIVFVAKQNTRKYGFFRNWMFRFQRITGIILVVFIAWHVFETRVQIGL 123 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 GN + + +M I+T P + Y++GV+AA FHFANGLWSFL+SWGIT P+SQR+S+ Sbjct: 124 GNAELDY--SLMEGILTNPFMFWFYVVGVIAAVFHFANGLWSFLVSWGITQTPKSQRIST 181 Query: 195 VICLGLFVIVSFMFLFSLVTF 215 CLG+F+ VS++ + SL+ F Sbjct: 182 YACLGVFLAVSYLGIRSLIKF 202 >ref|NP_243959.1| succinate dehydrogenase cytochrome b-558; succinate dehydrogenase cytochrome b558 [Bacillus halodurans] pir||E84036 succinate dehydrogenase cytochrome b558 sdhC [imported] - Bacillus halodurans (strain C-125) dbj|BAB06812.1| succinate dehydrogenase cytochrome b-558 [Bacillus halodurans] Length = 209 Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 92/205 (44%), Positives = 145/205 (70%), Gaps = 4/205 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R F++R++HSLLGVIP+G F ++H + N A GAS F + ++ SLP + LE+F I Sbjct: 5 REFFNRRLHSLLGVIPIGIFLIQHFVVNHFAT-AGASAFNQAAHFMESLPFRYALEIFII 63 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 ++P+LYH +YGLYIA+Q+K N + + RNW + LQRISGV IFI WH+++TR+Q A Sbjct: 64 FIPILYHAIYGLYIAFQAKNNTSHYGYFRNWMFLLQRISGVFLLIFIAWHVWETRIQAAF 123 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 G + ++ M +I++ P +L+ YI+GV++A FHFANGLWSF +SWGITV PRSQ++ + Sbjct: 124 GAEVNYDM---MADILSNPFMLVFYILGVVSATFHFANGLWSFFVSWGITVSPRSQQIMT 180 Query: 195 VICLGLFVIVSFMFLFSLVTFRDSE 219 + + +F ++F+ + +++ F + + Sbjct: 181 YVTVAIFFALTFVGIRAILAFINPD 205 >ref|NP_390723.1| succinate dehydrogenase (cytochrome b558 subunit) [Bacillus subtilis] sp|P08064|DHSC_BACSU Succinate dehydrogenase cytochrome B-558 subunit pir||DEBSSC succinate dehydrogenase (EC 1.3.99.1) cytochrome b558 - Bacillus subtilis gb|AAA22745.1| succinate dehydrogenase cytochrome b-558 subunit emb|CAA99546.1| cytochrome b558 subunit of succinate dehydrogenase complex [Bacillus subtilis] emb|CAB14805.1| succinate dehydrogenase (cytochrome b558 subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 202 Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 143/201 (71%), Gaps = 4/201 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R FY R++HSLLGVIP+G F ++H++ N A G A F + +++SLP + LE+F I Sbjct: 5 REFYFRRLHSLLGVIPVGIFLIQHLVVNQFAARG-AEAFNSAAHFMDSLPFRYALEIFII 63 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 +LPL+YH VYG+YIA+ +K N +++ RNW + LQR++G+IT IF+ WH+++TR+ + Sbjct: 64 FLPLIYHAVYGVYIAFTAKNNAGQYSYMRNWLFVLQRVTGIITLIFVSWHVWETRIAAQM 123 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 G + ++ M NI++ P +L YI+GVL+ FHF+NGLWSF ++WGITV PRSQR+S+ Sbjct: 124 GAEVNFDM---MANILSSPAMLGFYIVGVLSTIFHFSNGLWSFAVTWGITVTPRSQRIST 180 Query: 195 VICLGLFVIVSFMFLFSLVTF 215 + L +FV +S++ L ++ F Sbjct: 181 YVTLIIFVALSYVGLKAIFAF 201 >ref|NP_980938.1| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus ATCC 10987] gb|AAS43546.1| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus ATCC 10987] Length = 208 Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 91/205 (44%), Positives = 138/205 (67%), Gaps = 4/205 (1%) Query: 15 RGFYSRKIHSLLGVIPLGFFFLEHMLTNFSAVEGGASGFTDSVLWLNSLPLVFFLELFGI 74 R + RK HSL+GVIP+G F +H++ N A G A F + ++ LP + LE+F I Sbjct: 4 REYTFRKWHSLMGVIPVGVFLTQHLIVNNFATRG-AEAFNKAAGFMELLPFRYALEIFII 62 Query: 75 WLPLLYHGVYGLYIAYQSKPNLNRFNLERNWRYTLQRISGVITFIFIVWHLYDTRVQVAL 134 +LP+LYH +YGLYIA+ +K N + RNW + QRISG++T IFI WH+++TR+Q AL Sbjct: 63 FLPILYHAIYGLYIAFTAKNNAVSYGYFRNWMFVFQRISGIVTLIFISWHVWETRIQAAL 122 Query: 135 GNVKHEELGGVMHNIVTQPLLLMVYIIGVLAACFHFANGLWSFLISWGITVGPRSQRVSS 194 G + ++ M +I+ P + Y++GV++ FHFANGLW+F ISWGITV PRSQR+S+ Sbjct: 123 GKEVNYDM---MADILNNPAMFAFYLVGVVSTIFHFANGLWTFCISWGITVSPRSQRIST 179 Query: 195 VICLGLFVIVSFMFLFSLVTFRDSE 219 + L +F+ +S++ + +L+ F D + Sbjct: 180 YVTLAIFLGLSYVGVSALLAFIDPQ 204 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.145 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 349,015,212 Number of extensions: 14587125 Number of successful extensions: 41186 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 41146 Number of HSP's successfully gapped: 24 Length of query: 234 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 112 Effective length of database: 425,995,500 Effective search space: 47711496000 Effective search space used: 47711496000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)