BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0004.p (1082 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_655048.1| UvrD-helicase, UvrD/REP helicase [Bacillus anth... 867 0.0 ref|NP_977565.1| ATP-dependent nuclease, subunit B [Bacillus cer... 867 0.0 ref|NP_388943.1| ATP-dependent deoxyribonuclease (subunit B) [Ba... 866 0.0 ref|NP_830923.1| ATP-dependent nuclease subunit B [Bacillus cere... 857 0.0 ref|NP_692102.1| ATP-dependent deoxyribonuclease subunit B [Ocea... 766 0.0 >ref|NP_655048.1| UvrD-helicase, UvrD/REP helicase [Bacillus anthracis A2012] ref|NP_843625.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames] gb|AAP25111.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames] Length = 1171 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1082 (42%), Positives = 677/1082 (62%), Gaps = 43/1082 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEE--QLSGMRDST 58 ML+ KI+ RK+ L +F ++++ GF E L + E KR + +++ E Q S+ Sbjct: 94 MLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSS 153 Query: 59 LRSPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA+K+ DL +++ + E+ + Y+D ED L L E + S Y++G+E+++DGFH Sbjct: 154 AEQKLLANKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHS 213 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQP-HDLELFHPAAVTFIKLRGMAEEMG 177 F+ QE ++R+LM ++VTI+LT+D QP ++L+LF+ +T+ K++ +A E Sbjct: 214 FSPQELEIVRQLMICGARVTITLTIDE--KTLAQPVNELDLFYETTLTYEKIKQVAREEK 271 Query: 178 LTVWDELLAPPVL--PRFAGSPVLAHLERGFGRR--DRWTGXXXXXXXXXXXXXXXSRRA 233 + + + P++ PRF SP LAHLE + R +++ G + RA Sbjct: 272 IEIEKTI---PLMEQPRF-HSPALAHLEMHYEARPNEKFHGEASVTIHTAA-----NLRA 322 Query: 234 EVEGSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHP 293 EVEG RE+ RL EE +Y ++AV +RN Y + LF DY IP F+D+K HHP Sbjct: 323 EVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHP 382 Query: 294 LVEFIRSAFDVVRRRWRYEDVFRCVKTELLLPLD--RSVTRADMDALENYVLACGIQGYR 351 LVE IRSA +++ WRY+ VFRCVKTELL PLD + R +MD ENY LA G+QG R Sbjct: 383 LVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKR 442 Query: 352 WTDGRSW--KGIPSLSLEGARVVDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALEL 407 WT W + SL + D E + K+ R V+ P+ ++R+K++ + +++ Sbjct: 443 WTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQM 502 Query: 408 CKAVYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERME 467 C+AVY L+++D +KLE + RA E G A +H Q+W V+ LLD EM+G E+M Sbjct: 503 CEAVYLFLEELDVPKKLEALRIRAEENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMS 562 Query: 468 FEVFAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKED 527 +F V+ TGL L+ +PP+LDQVL+ N+DR+R+S VK F++G NEGV+PA ++ Sbjct: 563 LSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDE 622 Query: 528 GILSEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLP 587 G+LS+ ER +L AG+ELAP + + LL+E+F++Y +T A+ KL+IS ADEEGK LL Sbjct: 623 GMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLA 682 Query: 588 SEIIRQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEAL-HLSFVSQPEQTLRMLIMQL 646 S I+++ MFP +K++F++ +D L L +S+V+ PE TL ++ QL Sbjct: 683 SSFIKKIKRMFPD-VKDTFIT----------NDVNDLSRLEQISYVATPEVTLSYVMQQL 731 Query: 647 RQY-RQGVEIP-AIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGT 704 + + R G E WWDVYN+++T E+ K R+L SLFYRN +L S LYG Sbjct: 732 QTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGD- 790 Query: 705 TLRGSVSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGR 764 ++GSVSRME F CA++HFA +GL L+ER ++KL APDIG+LFHAAL +A RL ++ R Sbjct: 791 KIKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENR 850 Query: 765 SWGSMSAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARR 824 +W +S +EC + ++ ++PLLQ +IL+SS R+ Y+ +KL+ I+ R S+IL EHA+ Sbjct: 851 TWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKS 910 Query: 825 GSFEPVGLELDFGPG--KDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKS 882 F PV LE+ FG G LPP+ +LPNG MEVVGRIDRVD AE E G LR+IDYKS Sbjct: 911 SGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKS 970 Query: 883 SHKDLKLHEVYYGLSLQMLTYLDVLLTYSEQWL--GQTALPAGTLYFHVHDPLLTSANGM 940 S K L L EVYYGL+LQMLTYLDV+ + ++ W+ G TA PAG LYFH+H+P++ Sbjct: 971 SSKALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGGTASPAGVLYFHIHNPIVEVKGDA 1030 Query: 941 NREQAEQELMKRFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATP 1000 + + E+E++K+FKMKGL+ D +VV LMD L G S I+ LK DGSF + +S+A+ Sbjct: 1031 SEAEIEKEILKKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASE 1090 Query: 1001 EQWGHLLSSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYN 1060 +++ L V T +IG ITEG + I PY+ + ACTFC+F+ VCQFDE++E N + Sbjct: 1091 QEFNVLQKYVHHTFENIGKDITEGVIDIAPYKKGNKAACTFCNFKSVCQFDESLEDNQFR 1150 Query: 1061 NL 1062 L Sbjct: 1151 TL 1152 >ref|NP_977565.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987] gb|AAS40173.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987] Length = 1171 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/1081 (42%), Positives = 675/1081 (62%), Gaps = 41/1081 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEE--QLSGMRDST 58 ML+ KI+ RK+ L +F ++++ GF E L + E KR + +++ E Q S+ Sbjct: 94 MLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSS 153 Query: 59 LRSPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA+K+ DL +++ + E+ + Y+D ED L L E + S Y++G+EI++DGFH Sbjct: 154 AEQKLLANKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHS 213 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQP-HDLELFHPAAVTFIKLRGMAEEMG 177 F+ QE ++R+LM ++VTI+LTLD QP ++L+LF+ +T+ K++ +A E Sbjct: 214 FSPQELEIVRQLMICGARVTITLTLDE--KTLAQPVNELDLFYETTLTYEKIKQVAREEK 271 Query: 178 LTVWDELLAPPVL--PRFAGSPVLAHLERGFGRR--DRWTGXXXXXXXXXXXXXXXSRRA 233 + + + P++ PRF SP LAHLE + R +++ G + RA Sbjct: 272 IEIEKTI---PLMEQPRF-HSPALAHLEAHYEARPNEKFNGEASVTIHTAA-----NLRA 322 Query: 234 EVEGSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHP 293 EVEG RE+ RL +E +Y ++AV +RN Y + LF DY IP F+D+K HHP Sbjct: 323 EVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHP 382 Query: 294 LVEFIRSAFDVVRRRWRYEDVFRCVKTELLLPLD--RSVTRADMDALENYVLACGIQGYR 351 LVE IRSA +++ WRY+ VFRCVKTELL PLD + R +MD ENY LA G+QG R Sbjct: 383 LVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKR 442 Query: 352 WTDGRSW--KGIPSLSLEGARVVDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALEL 407 WT W + SL + D E + K+ R V+ P+ ++R+K++ + +++ Sbjct: 443 WTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQM 502 Query: 408 CKAVYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERME 467 C+AVY L+++D +KLE + RA E G A +H Q+W V+ LLD EM+G E+M Sbjct: 503 CEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMS 562 Query: 468 FEVFAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKED 527 +F V+ TGL L+ +PP+LDQVL+ N+DR+R+S VK F++G NEGV+PA ++ Sbjct: 563 LSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDE 622 Query: 528 GILSEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLP 587 G+LS+ ER +L AG+ELAP + + LL+E+F++Y +T A+ KL+IS ADEEGK LL Sbjct: 623 GMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLA 682 Query: 588 SEIIRQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQLR 647 S I+++ MFP +K++F++ D + + +S+V+ PE TL ++ QL+ Sbjct: 683 SSFIKKIKRMFPD-VKDTFITN---------DVNDLSRSEQISYVATPEVTLSYVMQQLQ 732 Query: 648 QY-RQGVEIP-AIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTT 705 + R G E WWDVYN+++T E+ K R+L SLFYRN +L S LYG Sbjct: 733 TWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGD-K 791 Query: 706 LRGSVSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRS 765 ++GSVSRME F CA++HFA +GL L+ER ++KL APDIG+LFHAAL +A RL ++ R+ Sbjct: 792 IKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRT 851 Query: 766 WGSMSAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRG 825 W +S +EC + ++ ++PLLQ +IL+SS R+ Y+ +KL+ I+ R S+IL EHA+ Sbjct: 852 WADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSS 911 Query: 826 SFEPVGLELDFGPG--KDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSS 883 F PV LE+ FG G LPP+ +LPNG MEVVGRIDRVD AE E G LR+IDYKSS Sbjct: 912 GFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS 971 Query: 884 HKDLKLHEVYYGLSLQMLTYLDVLLTYSEQWL--GQTALPAGTLYFHVHDPLLTSANGMN 941 K L L EVYYGL+LQMLTYLDV+ + + W+ G TA PAG LYFH+H+P++ + Sbjct: 972 SKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHIHNPIVEVKGDAS 1031 Query: 942 REQAEQELMKRFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPE 1001 + E+E++K+FKMKGL+ D +VV LMD L G S I+ LK DGSF + +S+A+ + Sbjct: 1032 EAEIEKEILKKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQ 1091 Query: 1002 QWGHLLSSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNN 1061 ++ L V T +IG ITEG + I PY+ + ACTFC+F+ VCQFDE++E N + Sbjct: 1092 EFNVLQKYVHHTFENIGKDITEGVIDIAPYKKGNKAACTFCNFKSVCQFDESLEDNQFRT 1151 Query: 1062 L 1062 L Sbjct: 1152 L 1152 >ref|NP_388943.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis] sp|P23477|ADDB_BACSU ATP-dependent nuclease subunit B pir||A39432 ATP-dependent deoxyribonuclease chain B - Bacillus subtilis gb|AAA22200.1| ATP-dependent nuclease [Bacillus subtilis] emb|CAA74481.1| ATP-dependent nuclease [Bacillus subtilis] emb|CAB12902.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. 168] Length = 1166 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/1087 (42%), Positives = 673/1087 (61%), Gaps = 29/1087 (2%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRDSTLR 60 ML+ K+I K+E K++ +SD+ GF ++ ++ TE KR CL D+ S R Sbjct: 94 MLLRKLIEEHKQEFKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESGTASEYR 153 Query: 61 SP-ILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHGF 119 +L+ KL DL I++ ++E+ ++ Y+ ED L LAEHI + I+G+ I+VDGF+ F Sbjct: 154 GERVLSEKLHDLSILYQQMEKSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQF 213 Query: 120 TTQEFAVLRELMQYASKVTISLTLDRIYPPGLQ--PHDLELFHPAAVTFIKLRGMAEEMG 177 T QEF VL +LM +A +T SLT D+ P + PH+LELF T+ +L A+E+ Sbjct: 214 TPQEFRVLEQLMVHAEHITFSLTADK---PSYEREPHELELFRMTGKTYYRLHQKAKELN 270 Query: 178 LTV-WDELLAPPVLPRFAGSPVLAHLERGFGRRDRWTGXXXXXXXXXXXXXXXSRRAEVE 236 L + + EL R +P LAHLE + R +RRAE+E Sbjct: 271 LDITYKELSGTE---RHTKTPELAHLEAQYEARP--AIPYAEKQEALTVMQAANRRAELE 325 Query: 237 GSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHPLVE 296 G RE+ L RE+G +Y ++A+ R DY+ + +F DY IP+F+D K + L+HPL+E Sbjct: 326 GIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIE 385 Query: 297 FIRSAFDVVRRRWRYEDVFRCVKTELLLPLD--RSVTRADMDALENYVLACGIQGYRWTD 354 FIRS+ DV++ WRYE VFRCVKTELL PL+ ++ R +D LENY +A GI+G RWT Sbjct: 386 FIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTK 445 Query: 355 GR--SWKGIPSLSLEGARVVDE-ELLAKMEACRRVITGPLQAFEQRIKKSRSALELCKAV 411 G ++ SL + A+ E E+ + R I PL ++R+KK+++ E +A+ Sbjct: 446 GDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEAL 505 Query: 412 YFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFEVF 471 Y L++ D KL+Q RA + G+ A++H Q W AV+ LL++ EMMG++ + ++F Sbjct: 506 YRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLF 565 Query: 472 AGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGILS 531 ++E G L L+PPALDQV VGNMD +R+ G F+LG N+GV+PA+ E+G+LS Sbjct: 566 QQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLS 625 Query: 532 EGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSEII 591 + +R L+ G+EL+ G +LLDE FLIY ++ S +L++SY AD EGK LLPS I+ Sbjct: 626 DDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSMIV 685 Query: 592 RQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQLRQYRQ 651 ++L +FP KE L+ P + D E L +V QLR + + Sbjct: 686 KRLEELFPHH-KERLLTNEPEQVS----DEE-----QLMYVVNKSVAQSFTASQLRLWTR 735 Query: 652 GVEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGSVS 711 +I +WW YN +++ + + ++L SLF+RNE +L+R S +LYG ++GSVS Sbjct: 736 EYDISDVWWSTYNVLMSEQD-RLQSKKLFSSLFFRNEVKQLERSVSRQLYG-ERIQGSVS 793 Query: 712 RMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSMSA 771 RME F AC FSHFAS+GL LKERQ +KL+APDIGQLFH++L ++ RL+ + W ++ Sbjct: 794 RMETFNACPFSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDWRDLTK 853 Query: 772 EECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEPVG 831 E+C + + V+RL+P LQ EIL+SS R+ Y+ KL+ IV R S IL EHA+ F P+G Sbjct: 854 EQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIG 913 Query: 832 LELDFGPGKDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKLHE 891 LEL FG LPPL L NGC ME+VGRIDRVD AE +G+LLR++DYKSS K L L E Sbjct: 914 LELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKGLDLAE 973 Query: 892 VYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNREQAEQELMK 951 VYYGL+LQMLTYLD+ +T+S WLG A PAG LYFH+HDP++ S + ++ EQE+ K Sbjct: 974 VYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHIHDPMIQSNLPLGLDEIEQEIFK 1033 Query: 952 RFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPEQWGHLLSSVR 1011 +FKMKGLL D+EVV LMDTTL +G S+I+ LK DGS S ++ +++ L VR Sbjct: 1034 KFKMKGLLLGDQEVVRLMDTTLQEGRSNIINAGLKKDGSLRSDSAAVGEKEFDLLTKHVR 1093 Query: 1012 STISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGKEVIW 1071 T + G +IT+G V+I+PY+++ +T CT+C+F+ VCQFDE++E N Y L + I Sbjct: 1094 RTFQEAGEQITDGRVSIEPYKMKNKTPCTYCAFKSVCQFDESLEENEYRPLKAEKDKTIL 1153 Query: 1072 DLLSREG 1078 + + +E Sbjct: 1154 EWIKKEA 1160 >ref|NP_830923.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579] gb|AAP08124.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579] Length = 1171 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/1081 (42%), Positives = 672/1081 (62%), Gaps = 41/1081 (3%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEE--QLSGMRDST 58 ML+ KI+ RK+ L +F ++++ GF E L + E KR + +++ E Q S+ Sbjct: 94 MLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSS 153 Query: 59 LRSPILASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFHG 118 +LA+K+ DL +++ + E+ + Y+D ED L L E + S Y+ G+EI++DGFH Sbjct: 154 AEQKLLANKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHS 213 Query: 119 FTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQP-HDLELFHPAAVTFIKLRGMAEEMG 177 F+ QE ++R+LM ++VTI+LT+D QP ++L+LF+ +T+ K++ +A E Sbjct: 214 FSPQELEIVRQLMICGARVTITLTIDE--KTLAQPVNELDLFYETTLTYEKIKQVAREEK 271 Query: 178 LTVWDELLAPPVL--PRFAGSPVLAHLERGFGRR--DRWTGXXXXXXXXXXXXXXXSRRA 233 + + + P++ PRF SP LAHLE + R +++ G + RA Sbjct: 272 IEIEKTI---PLMEQPRF-HSPALAHLEAHYEARPNEKFNGEASVTISTAA-----NLRA 322 Query: 234 EVEGSLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHP 293 EVEG RE+ +L +E +Y ++AV +RN Y + LF DY IP F+D+K HHP Sbjct: 323 EVEGVAREIRKLVADEKYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHP 382 Query: 294 LVEFIRSAFDVVRRRWRYEDVFRCVKTELLLPLD--RSVTRADMDALENYVLACGIQGYR 351 LVE IRSA +++ WRY+ VFRCVKTELL PLD + R +MD ENY LA G+QG R Sbjct: 383 LVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKR 442 Query: 352 WTDGRSW--KGIPSLSLEGARVVDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALEL 407 WT W + SL + D E + K+ R V+ P+ ++R+K++ + +++ Sbjct: 443 WTAEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQM 502 Query: 408 CKAVYFLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERME 467 C+AVY L+++D +KLE++ RA E G A +H Q+W V+ LLD EM+G E+M Sbjct: 503 CEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMS 562 Query: 468 FEVFAGVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKED 527 +F V+ TGL L+ +PP+LDQVL+ N+D +R+S V+ F++G NEGV+P ++ Sbjct: 563 LSMFTDVMSTGLEALQFANIPPSLDQVLIANIDHSRLSDVRATFIIGVNEGVIPVAPMDE 622 Query: 528 GILSEGERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLP 587 G+LS+ ER +L AG+ELAP + + LL+E+F++Y +T AS KL+IS ADEEGK LL Sbjct: 623 GMLSDEEREVLGAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLA 682 Query: 588 SEIIRQLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQLR 647 S I+++ MFP +K+SF+S D + + +S+V+ PE TL ++ L Sbjct: 683 SSFIKKIKRMFPN-VKDSFISN---------DVNDLSRSEQISYVATPEVTLSYVMQHLL 732 Query: 648 QY-RQGVEIP-AIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTT 705 + R G E WWDVYN+++T E+ K R+L SLFYRN +L S LYG Sbjct: 733 TWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGD-I 791 Query: 706 LRGSVSRMEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRS 765 ++GSVSRME F CA++HFA +GL L+ER ++KL APDIG+LFHAAL +A +L ++ R+ Sbjct: 792 IKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRT 851 Query: 766 WGSMSAEECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRG 825 W +S +EC + ++ ++PLLQ +IL+SS R+ Y+ +KL+ I+ R S+IL EHA+ Sbjct: 852 WADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSS 911 Query: 826 SFEPVGLELDFGPG--KDLPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSS 883 F PV LE+ FG G LPP+ +LPNG MEVVGRIDRVD AE E G LR+IDYKSS Sbjct: 912 GFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS 971 Query: 884 HKDLKLHEVYYGLSLQMLTYLDVLLTYSEQWL--GQTALPAGTLYFHVHDPLLTSANGMN 941 K L L EVYYGL+LQMLTYLDV+ + ++ W+ G A PAG LYFH+H+P++ Sbjct: 972 SKALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHIHNPIVEMKGDAT 1031 Query: 942 REQAEQELMKRFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPE 1001 + E+E++K+FKMKGL+ D +VV LMD L G S I+ LK DGSF + +S+A+ + Sbjct: 1032 EAEIEKEILKKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQ 1091 Query: 1002 QWGHLLSSVRSTISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNN 1061 ++ L V T +IG ITEG + I PY++ + ACTFC+F+ VCQFDE++E N + + Sbjct: 1092 EFNVLQKYVHHTFENIGKDITEGVIDIAPYKMGNKAACTFCNFKSVCQFDESLEDNQFRS 1151 Query: 1062 L 1062 L Sbjct: 1152 L 1152 >ref|NP_692102.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis HTE831] dbj|BAC13137.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis HTE831] Length = 1166 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1087 (38%), Positives = 622/1087 (57%), Gaps = 27/1087 (2%) Query: 1 MLIYKIISRRKEELKLFGASSDRPGFVERLSQLHTELKRCCLGAADLEEQLSGMRDSTLR 60 M++ KII ++ + F + + GF+ +L + TELKR + DL Q S + D + Sbjct: 94 MMLRKIIEEKQGDWNAFQKALKKQGFLGQLETMLTELKRYEITPDDLRMQQSHLTDFVHQ 153 Query: 61 SPI---LASKLDDLHIVFSELEQEMSQLYIDEEDRLAELAEHIKDSSYIRGSEIWVDGFH 117 SP L KL DL ++ + Y+D ED+L L + IK SS + ++I++DGFH Sbjct: 154 SPSEQGLTRKLSDLIYIYETFIYALQGTYVDSEDQLQLLIQQIKQSSILNNADIYIDGFH 213 Query: 118 GFTTQEFAVLRELMQYASKVTISLTLDRIYPPGLQPHDLELFHPAAVTFIKLRGMAEEMG 177 FT QE +VL ELM+ ++ +T++LTLD P +L+LF+ + T+ L+ +A E G Sbjct: 214 SFTPQEQSVLTELMKTSNSITVALTLDD--PWKEDASELDLFYQPSQTYHVLKQLAWEAG 271 Query: 178 LTVWDELLAPPVLPRFAGSPVLAHLERGFGRRDRWTGXXXXXXXXXXXXXXXSRRAEVEG 237 + V D ++ + F P AH+E+ F R RAEVEG Sbjct: 272 VPVEDPIILDTLEGNFQNRPYFAHMEKYFDSR---PAPAYEGEVPIEIFEAVHPRAEVEG 328 Query: 238 SLREMLRLAREEGAKYGEMAVFMRNIADYEQLAAPLFQDYGIPFFLDQKMNELHHPLVEF 297 +++L L R+ +Y ++A+ +R Y L +F DY +P F+D+K LHHPL+E Sbjct: 329 IAQQVLELIRDNRYRYRDIALLIRQPEVYHDLIETIFNDYELPVFIDEKRPMLHHPLIEL 388 Query: 298 IRSAFDVVRRRWRYEDVFRCVKTELLLPLDRS--VTRADMDALENYVLACGIQG-YRWTD 354 IRS +VV+ WR + +FR +KT L+ D +T +D LENYV+ GI+ ++W Sbjct: 389 IRSILEVVQGNWRNDAIFRVLKTGLIPSADDEFPLTMDSIDQLENYVIEFGIRSRHQWIG 448 Query: 355 GRSWKGIPSLSLEGARVVDEE--LLAKMEACRRVITGPLQAFEQRIKKSRSALELCKAVY 412 WK + + D E L M R + + +++++ + + +LC A+Y Sbjct: 449 ENKWKYQRFRGFDSSAQTDRERELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMY 508 Query: 413 FLLQDMDAARKLEQMSARALELGQPEAAREHTQLWGAVLDLLDQIAEMMGNERMEFEVFA 472 L+++ +LE + G PE RE Q+W AV+ L D++ E+ G E+M+ VF Sbjct: 509 QWLEELKIPDQLEVTRKYYDDQGLPEKGREQEQVWDAVIQLFDEMVEIAGEEKMDLSVFQ 568 Query: 473 GVLETGLAELKMGLVPPALDQVLVGNMDRTRVSGVKYAFLLGFNEGVVPAQFKEDGILSE 532 L+ G+ L+ VPP++D ++VG +DR+R+S ++ AFLLG NEG+ P + DG++ E Sbjct: 569 VALDAGIETLQFSHVPPSMDHIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDE 628 Query: 533 GERLLLENAGMELAPGSSRKLLDERFLIYNTLTTASRKLWISYATADEEGKALLPSEIIR 592 ERLLLE G++LA S R+LLD+ F +Y T A +L ISY +DEEGKA +PS++I Sbjct: 629 AERLLLEQNGLKLADTSERQLLDDWFYMYLAFTVAKDRLKISYLLSDEEGKAKMPSQLIH 688 Query: 593 QLHGMFPGALKESFLSGFPSSAAGVPDDAETLEALHLSFVSQPEQTLRMLIMQLRQYRQG 652 ++ +FP L P+D E+ FVS ++ L QL ++++G Sbjct: 689 RVEELFPATKNHILLQD--------PED----ESNTRRFVSTELKSRSALTAQLAKFKKG 736 Query: 653 VEIPAIWWDVYNWFITDAEYGPKLERLLGSLFYRNEGIRLKRETSLRLYGGTTLRGSVSR 712 I IWW+VY W++ G R+L L Y N+ L+++T +LY ++ SVSR Sbjct: 737 YPIDPIWWEVYQWYVEHHPQGGTTHRVLQGLHYENKPESLQKDTVEQLYP-KRIQASVSR 795 Query: 713 MEKFVACAFSHFASYGLRLKERQLYKLKAPDIGQLFHAALSDMALRLQKQGRSWGSMSAE 772 +E + C++ HFA Y L L+ER+ YKL APDIGQLFH AL + + +G + +++ Sbjct: 796 LETYYRCSYQHFAKYSLNLEERRTYKLDAPDIGQLFHEALKKITEWIHAEGNDFSALTKS 855 Query: 773 ECRREAGETVDRLSPLLQGEILMSSKRYGYISRKLKNIVGRASVILGEHARRGSFEPVGL 832 + A V LSP+LQ +IL SS RY YI +KL+ ++ RA+ +LGE AR F PVGL Sbjct: 856 QSSHYANRAVTELSPVLQHQILHSSNRYAYIQKKLEEVIARATFVLGEQARLSHFSPVGL 915 Query: 833 ELDFGPGKD-LPPLRITLPNGCVMEVVGRIDRVDMAEGEQGILLRVIDYKSSHKDLKLHE 891 EL FG G + +P L + L NG + + GRIDRVD AE E + LR+IDYKSS K L L E Sbjct: 916 ELGFGDGNNQIPSLSMLLENGYELVLRGRIDRVDKAELENNLYLRIIDYKSSSKGLDLTE 975 Query: 892 VYYGLSLQMLTYLDVLLTYSEQWLGQTALPAGTLYFHVHDPLLTSANGMNREQAEQELMK 951 VYYG++LQML YLDV+LT+SE+WLGQ A PAG LYFHVH+P++++ M E+EL K Sbjct: 976 VYYGIALQMLAYLDVVLTHSEKWLGQQADPAGVLYFHVHNPMISAKGSMTEADIEEELFK 1035 Query: 952 RFKMKGLLTADREVVSLMDTTLDKGHSSIVPVALKSDGSFYSSASVATPEQWGHLLSSVR 1011 ++KM+GLL ++ E+V +MD++L+ G S IVP ALK +G FYS + +A + L + + Sbjct: 1036 QYKMQGLLLSNEEIVKMMDSSLETGSSQIVPAALKKNGGFYSYSKIADQSTFETLQNHIH 1095 Query: 1012 STISDIGTRITEGDVAIQPYRIQQETACTFCSFRPVCQFDETVEGNAYNNLGKPGKEVIW 1071 + G IT G V + PY+ +Q+ ACT+C F VCQFD +E N Y + + Sbjct: 1096 QLLKSAGIDITNGSVDVNPYQHKQQKACTYCPFHSVCQFDPVLEENNYRKFADIKENDLL 1155 Query: 1072 DLLSREG 1078 L REG Sbjct: 1156 QLFEREG 1162 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,535,130,989 Number of extensions: 63020377 Number of successful extensions: 139029 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 138804 Number of HSP's successfully gapped: 49 Length of query: 1082 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 946 Effective length of database: 387,984,114 Effective search space: 367032971844 Effective search space used: 367032971844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)