BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0423.0003.p (1360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cer... 993 0.0 ref|NP_655049.1| UvrD-helicase, UvrD/REP helicase [Bacillus anth... 989 0.0 ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cere... 983 0.0 ref|NP_388944.1| ATP-dependent deoxyribonuclease (subunit A) [Ba... 954 0.0 ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Ocea... 857 0.0 >ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] Length = 1241 Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust. Identities = 578/1360 (42%), Positives = 777/1360 (57%), Gaps = 137/1360 (10%) Query: 10 KPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVAT 69 KPEGS W+DDQW+A+ +G DILVAAAAGSGKTAVLVERII+KI NEEN VDRLLV T Sbjct: 8 KPEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVT 67 Query: 70 FTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLEV 129 FT AAA EM+ RI EA R+QL+LL +ASI+T+HSFCL+V Sbjct: 68 FTNAAAQEMKNRIGEA--------LEKVLIDEPGSQHIRKQLSLLNKASISTIHSFCLQV 119 Query: 130 IRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSGE 189 IR YY ++ +DP FRI N+ E E++++ +Y G ++T+F L D ++ + Sbjct: 120 IRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEY----GIEDNTIFFELVDRYTSD 175 Query: 190 RSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTLD 249 RSDD + ++ LH +R+HP P +WL + + + + + + +L D K L+ Sbjct: 176 RSDDDLQRMILALHTESRAHPNPEKWLDKLVEAYDV-EGKTIEDLVYASYLLEDVKFQLE 234 Query: 250 GAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGKL 309 A +R+ E+A+ P GPAP + L ADL ++ L A W +Y+ +S+ L Sbjct: 235 TAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYEAMQNVSWQTL 293 Query: 310 KACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAETV 369 K KK + + ++V LR+ K + +LQ+ LF R E+FL + + P++ +L + V Sbjct: 294 KRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHPVLEKLVQLV 353 Query: 370 IEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLDE 429 F ER++ K +GMVDF+DLEH+CLQIL SE G PS A++YR++F EVL+DE Sbjct: 354 KVFTERFQAMKRDKGMVDFTDLEHFCLQILSE-QSENGEMKPSAVALQYRNKFAEVLVDE 412 Query: 430 YQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAA-GG 486 YQDTN VQE I++ +++ ES GN FMVGD+KQSIYRFRLAEPGLFL KYK F GG Sbjct: 413 YQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGG 472 Query: 487 GSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPDTY 546 G IDLA+NFRSR EV+ N IF+QIM V EI YD AEL GA +P +G D Sbjct: 473 GMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGASYP----EGEDV- 527 Query: 547 FAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMSGG 606 A ELL I DGE E E E AQLEAR + +RI M SG Sbjct: 528 -AAELLCIQQTEEEVI-------DGE------EGAEVEKAQLEARLMAQRIKAMVD-SGY 572 Query: 607 EPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQATEV 666 E +YD+ MRPV Y D VILLRS W P ++EEL+L+GIP Y D GYF+ATEV Sbjct: 573 E---VYDRKTDSMRPVQYRDFVILLRSMP-WAPQIMEELKLQGIPVYADLATGYFEATEV 628 Query: 667 EIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRL-CSDGSFLDAVLAAAGEQTE 725 I +++ +++DNP QDIPLA VLRSP+V L +EELA +R GSF + + + Sbjct: 629 NIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSSFL----- 683 Query: 726 IGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQVFL 785 K A E +L KL+ F Sbjct: 684 -----------------------------------------KGAPLEEEKELHDKLEWFY 702 Query: 786 RQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFENDTN 845 L+GWR A Q SLS LIW++Y E+GY ++VGGLP G QRQ NL LYDRA Q+E T+ Sbjct: 703 NLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEA-TS 761 Query: 846 ARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKPFN 905 RGLFRFL FI R+ VRIMTIHKSKGLEFPVVF+AG+ + FN Sbjct: 762 FRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFN 821 Query: 906 RQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLTRP 965 QDL FL+HK+ GFG +F++P+ R+ Y TL LAI R+ ++EL+AEEMRVLYV LTR Sbjct: 822 TQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRA 881 Query: 966 RDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAILR 1025 ++K+IL+GTV+D + + W + + LL DH+ A YLDW+ P+L RH + IL Sbjct: 882 KEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEILL 941 Query: 1026 KLAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEALRHGRR 1085 +L G + ++G ++W + V+ EE+Q +LEALR + Sbjct: 942 EL--GQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPV--------QEEKQELLEALREKKA 991 Query: 1086 VPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEESLHGDA 1145 VP S +E EV RL W Y Y A+ AK SVTE+K +E +A Sbjct: 992 VPLQSERKE-EVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSD----------NA 1040 Query: 1146 GLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSVLEATIAR 1205 + R T RP+FMEK+GL+ +ERGTA H VMQHV L+ + V+ IA Sbjct: 1041 FIKKLRAPIQT------RPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAG 1094 Query: 1206 LTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAYHGLEYX 1265 + +LT EQAE + I + +F+ ++G+R++ A RE PF+ M+ A EAY + Sbjct: 1095 MVNKELLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGK 1154 Query: 1266 XXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAVL-EHQGGLE----T 1320 GES+L+QGVIDC+ EE + L+D+KTD + + GG + Sbjct: 1155 S---------------GESILVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPI 1199 Query: 1321 LKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 L+E+Y+ QL LY+KAL L PV E LYFFDG H VK+ Sbjct: 1200 LEERYKVQLSLYAKALEKSLQHPVKEKCLYFFDGNHVVKI 1239 >ref|NP_655049.1| UvrD-helicase, UvrD/REP helicase [Bacillus anthracis A2012] ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] Length = 1241 Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/1360 (42%), Positives = 777/1360 (57%), Gaps = 137/1360 (10%) Query: 10 KPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVAT 69 KPEGS W+DDQW+A+ +G DILVAAAAGSGKTAVLVERII+KI NEEN VDRLLV T Sbjct: 8 KPEGSQWTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVT 67 Query: 70 FTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLEV 129 FT AAA EM+ RI EA R+QL+LL +ASI+T+HSFCL+V Sbjct: 68 FTNAAAQEMKNRIGEA--------LEKVLIDEPGSQHVRKQLSLLNKASISTIHSFCLQV 119 Query: 130 IRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSGE 189 IR YY ++ +DP FRI N+ E E++++ +Y G ++T+F L D ++ + Sbjct: 120 IRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEY----GIEDNTIFFELVDRYTSD 175 Query: 190 RSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTLD 249 RSDD + ++ LH +R+HP P +WL + + + + + + +L D K L+ Sbjct: 176 RSDDDLQRMILALHTESRAHPNPEKWLDKLVEAYDV-EGKTIEDLVYASYLLEDVKFQLE 234 Query: 250 GAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGKL 309 A +R+ E+A+ P GPAP + L ADL ++ L A W +Y+ +S+ L Sbjct: 235 TAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYEAMQNVSWQTL 293 Query: 310 KACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAETV 369 K KK + + ++V LR+ K + +LQ+ LF R E+FL + + P++ +L + V Sbjct: 294 KRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHPVLEKLVQLV 353 Query: 370 IEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLDE 429 F ER++ K +GMVDF+DLEH+CLQIL SE G PS A++YR++F EVL+DE Sbjct: 354 KVFTERFQAMKRDKGMVDFTDLEHFCLQILSE-QSEDGEMKPSAVALQYRNKFAEVLVDE 412 Query: 430 YQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAA-GG 486 YQDTN VQE I++ +++ ES GN FMVGD+KQSIYRFRLAEPGLFL KYK F GG Sbjct: 413 YQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGG 472 Query: 487 GSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPDTY 546 G IDLA+NFRSR EV+ N IF+QIM V EI YD AEL GA +P +G D Sbjct: 473 GMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGASYP----EGEDV- 527 Query: 547 FAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMSGG 606 A ELL I DGE E E E AQLEAR + +RI M SG Sbjct: 528 -AAELLCIQQTEEEVI-------DGE------EGAEVEKAQLEARLMAQRIKAMVD-SGY 572 Query: 607 EPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQATEV 666 E +YD+ MRPV Y D VILLRS W P ++EEL+L+GIP Y D GYF+ATEV Sbjct: 573 E---VYDRKTDSMRPVKYRDFVILLRSMP-WAPQIMEELKLQGIPVYADLATGYFEATEV 628 Query: 667 EIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRL-CSDGSFLDAVLAAAGEQTE 725 I +++ +++DNP QDIPLA VLRSP+V L +EELA +R GSF + + + Sbjct: 629 NIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSSFL----- 683 Query: 726 IGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQVFL 785 K A E +L KL+ F Sbjct: 684 -----------------------------------------KGAPLEEEKELHDKLEWFY 702 Query: 786 RQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFENDTN 845 L+GWR A Q SLS LIW++Y E+GY ++VGGLP G QRQ NL LYDRA Q+E T+ Sbjct: 703 NLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEA-TS 761 Query: 846 ARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKPFN 905 RGLFRFL FI R+ VRIMTIHKSKGLEFPVVF+AG+ + FN Sbjct: 762 FRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFN 821 Query: 906 RQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLTRP 965 QDL FL+HK+ GFG +F++P+ R+ Y TL LAI R+ ++EL+AEEMRVLYV LTR Sbjct: 822 TQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRA 881 Query: 966 RDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAILR 1025 ++K+IL+GTV+D + + W + + LL DH+ A YLDW+ P+L RH + +L Sbjct: 882 KEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWIAPSLYRHRDSEMLL 941 Query: 1026 KLAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEALRHGRR 1085 +L G + ++G ++W + V+ EE+Q +LEALR + Sbjct: 942 EL--GQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPV--------QEEKQELLEALREKKA 991 Query: 1086 VPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEESLHGDA 1145 VP S +E EV RL W Y Y A+ AK SVTE+K +E +A Sbjct: 992 VPLESERKE-EVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSD----------NA 1040 Query: 1146 GLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSVLEATIAR 1205 + R T RP+FMEK+GL+ +ERGTA H VMQHV L+ + +L+ IA Sbjct: 1041 FIKKLRAPIQT------RPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAG 1094 Query: 1206 LTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAYHGLEYX 1265 + +LT EQAE + I + +F+ ++G+R++ A RE PF+ M+ A EAY + Sbjct: 1095 MVNKELLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGE 1154 Query: 1266 XXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAVL-EHQGGLE----T 1320 GES+L+QGVIDC+ EE + L+D+KTD + + GG E Sbjct: 1155 S---------------GESILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPI 1199 Query: 1321 LKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 L+ +Y+ QL LY+KAL L PV E LYFFDG H +K+ Sbjct: 1200 LETRYKVQLSLYAKALEKSLQHPVKEKCLYFFDGNHVIKV 1239 >ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] Length = 1241 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/1360 (42%), Positives = 776/1360 (57%), Gaps = 137/1360 (10%) Query: 10 KPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVAT 69 KPEGS W+DDQW+A+ +G DILVAAAAGSGKTAVLVERII+KI NEEN VDRLLV T Sbjct: 8 KPEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVT 67 Query: 70 FTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLEV 129 FT AAA EM+ RI EA R+QL+LL +ASI+T+HSFCL+V Sbjct: 68 FTNAAAQEMKNRIGEA--------LEKVLIDEPGSQHVRKQLSLLNKASISTIHSFCLQV 119 Query: 130 IRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSGE 189 IR YY ++ +DP FRI N+ E E++++ +Y G ++T+F L D ++ + Sbjct: 120 IRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEY----GIEDNTIFFELVDRYTSD 175 Query: 190 RSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTLD 249 RSDD + ++ LH +R+HP P +WL + + + + + + +L D K L+ Sbjct: 176 RSDDDLQRMILALHTESRAHPNPEKWLDKLVEAYDV-EGKTIEDLVYASYLLEDVKFQLE 234 Query: 250 GAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGKL 309 A +R+ E+A+ P GPAP + L AD+ ++ L A W +Y+ +S+ L Sbjct: 235 TAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYEAMQNVSWQTL 293 Query: 310 KACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAETV 369 K KK + + ++V LR+ K + +LQ+ LF R E+FL + + P++ +L + V Sbjct: 294 KRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHPVLEKLVQLV 353 Query: 370 IEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLDE 429 F ER++ K +GMVDF+DLEH+CLQIL SE G PS A++YR++F EVL+DE Sbjct: 354 KVFTERFQAMKRDKGMVDFTDLEHFCLQILSE-QSENGEMNPSAVALQYRNKFAEVLVDE 412 Query: 430 YQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAA-GG 486 YQDTN VQE I++ +++ ES GN FMVGD+KQSIYRFRLAEPGLFL KYK F GG Sbjct: 413 YQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGG 472 Query: 487 GSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPDTY 546 G IDLA+NFRSR EV+ N IF+QIM V EI YD AEL GA +P +G D Sbjct: 473 GMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGATYP----EGEDV- 527 Query: 547 FAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMSGG 606 A ELL I DGE E E E AQLEAR + +RI M SG Sbjct: 528 -AAELLCIQQTEEEVI-------DGE------EGAEVEKAQLEARLMAQRIKAMVD-SGY 572 Query: 607 EPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQATEV 666 E +YD+ MRPV Y D VILLRS W P ++EEL+L+GIP Y D GYF+ATEV Sbjct: 573 E---VYDRKNDSMRPVQYRDFVILLRSMP-WAPQIMEELKLQGIPVYADLATGYFEATEV 628 Query: 667 EIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRL-CSDGSFLDAVLAAAGEQTE 725 I +++ +++DNP QDIPLA VLRSP+V L +EELA +R GSF + + + Sbjct: 629 NIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMSSFL----- 683 Query: 726 IGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQVFL 785 K A E +L KL+ F Sbjct: 684 -----------------------------------------KGAPLEEEQELHDKLEWFY 702 Query: 786 RQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFENDTN 845 L+GWR A Q SLS LIW++Y E+GY ++VGGLP G QRQ NL LYDRA Q+E T+ Sbjct: 703 NLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEA-TS 761 Query: 846 ARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKPFN 905 RGLFRFL FI R+ VRIMTIHKSKGLEFPVVF+AG+ + FN Sbjct: 762 FRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFN 821 Query: 906 RQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLTRP 965 QDL FL+HK+ GFG +F++P+ R+ Y TL LAI R+ ++EL+AEEMRVLYV LTR Sbjct: 822 TQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRA 881 Query: 966 RDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAILR 1025 ++K+IL+GTV+D + + W + + LL DH+ A YLDW+ P+L RH + +L Sbjct: 882 KEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLL 941 Query: 1026 KLAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEALRHGRR 1085 +L G + ++G ++W + V+ EE+Q +LEALR + Sbjct: 942 EL--GQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPV--------QEEKQELLEALREKKA 991 Query: 1086 VPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEESLHGDA 1145 VP S +E EV RL W Y Y A+ AK SVTE+K +E +A Sbjct: 992 VPLQSERKE-EVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSD----------NA 1040 Query: 1146 GLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSVLEATIAR 1205 + R T RP+FMEK+GL+ +ERGTA H VMQHV L+ + VL+ IA Sbjct: 1041 FIKKLRAPIKT------RPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAG 1094 Query: 1206 LTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAYHGLEYX 1265 + +LT EQAE + I + +F+ ++G+R++ A RE PF+ M+ A EAY + Sbjct: 1095 MVNKELLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGK 1154 Query: 1266 XXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAVL-EHQGGLE----T 1320 E++L+QGVIDC+ EE + L+D+KTD + + GG E Sbjct: 1155 SE---------------ETILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPI 1199 Query: 1321 LKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 L+++Y+ QL LY+KAL L PV E LYFFDG H V + Sbjct: 1200 LEDRYKVQLSLYAKALEKSLQHPVKEKCLYFFDGNHVVNI 1239 >ref|NP_388944.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis] sp|P23478|ADDA_BACSU ATP-dependent nuclease subunit A pir||B39432 ATP-dependent deoxyribonuclease chain A addA - Bacillus subtilis gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis] emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis] emb|CAB12903.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/1360 (40%), Positives = 772/1360 (56%), Gaps = 139/1360 (10%) Query: 9 PKPEGSLWSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVA 68 PKP S W+DDQW AI +G DILVAAAAGSGKTAVLVER+IRKI+ EEN VDRLLV Sbjct: 4 PKPADSTWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVV 63 Query: 69 TFTKAAAAEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLE 128 TFT A+AAEM+ RI EA RRQL+LL RASI+TLHSFCL+ Sbjct: 64 TFTNASAAEMKHRIAEA--------LEKELVQRPGSLHIRRQLSLLNRASISTLHSFCLQ 115 Query: 129 VIRRYYQLIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSG 188 V+++YY LI +DPGFRI ++ E E++ +Y + GE F L D ++ Sbjct: 116 VLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAK----GE-KAFFELVDRYTT 170 Query: 189 ERSDDAVHSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTL 248 +R D + LV+++++++RSHP P WL + + + A+ P+ Q + D + L Sbjct: 171 DRHDLDLQFLVKQVYEYSRSHPNPEAWLESFVHLYDVSEKSAIEELPFYQYVKEDIAMVL 230 Query: 249 DGAASQLRQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGK 308 +GA +L + E+ PGGPAP ADN DL + L + + ++ELY +SF + Sbjct: 231 NGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQD--DFSELYKRVPAVSFKR 288 Query: 309 LKACKKDSTDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAET 368 KA K D DP L + +LR+ KK L +L+ F R E L L E P++ L + Sbjct: 289 AKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQL 348 Query: 369 VIEFGERYRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLD 428 VI +G+R+ K + ++DFSDLEHYCL IL A+++ G PS+AA Y++QF EVL+D Sbjct: 349 VISYGKRFEAAKQEKSIIDFSDLEHYCLAILT-AENDKGEREPSEAARFYQEQFHEVLVD 407 Query: 429 EYQDTNSVQEEIVRLISR--ESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFG-SAAG 485 EYQDTN VQE I++L++ E GN FMVGD+KQSIYRFRLAEP LFL KYK F S G Sbjct: 408 EYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEG 467 Query: 486 GGSVIDLARNFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHFPGAAEKGPDT 545 G IDL +NFRSR +++++ N +F+Q+M + E+ YDE+AEL GA +P E Sbjct: 468 TGRKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDET---- 523 Query: 546 YFAPELLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMSG 605 ELLLID AED + EA E ET Q EA+AI + I ++ Sbjct: 524 --ETELLLID-----------NAEDTD---ASEEAEELETVQFEAKAIAKEIRKLI---- 563 Query: 606 GEPLMIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQATE 665 P +YD K R + Y DIVILLRS W P ++EELR +GIP Y + GYF+A E Sbjct: 564 SSPFKVYDGKKKTHRNIQYRDIVILLRSMP-WAPQIMEELRAQGIPVYANLTSGYFEAVE 622 Query: 666 VEIALSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLCSDGSFLDAVLAAAGEQTE 725 V +ALS+L+++DNP QDIPLA VLRSP+V E EL+ +RL + + Sbjct: 623 VAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKA-------------- 668 Query: 726 IGDGSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQVFL 785 P + M A + S +L +KL F Sbjct: 669 ---------------------------------PYYEAMKDYLAAGDRSDELYQKLNTFY 695 Query: 786 RQLEGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFENDTN 845 L+ WR + S+S LIW +Y ++ Y+++VGG+PGG QRQ NL LYDRA Q+E+ T Sbjct: 696 GHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYES-TA 754 Query: 846 ARGLFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKPFN 905 RGLFRFL FI R++ VR+MTIH SKGLEFPVVF+AG+ + FN Sbjct: 755 FRGLFRFLRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFN 814 Query: 906 RQDLHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLTRP 965 DL+ +L+ KELGFG +++ P+ R++YPTLP +A+ ++ R ELL+EE+RVLYV LTR Sbjct: 815 MMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRA 874 Query: 966 RDKMILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAILR 1025 ++K+ L+G+ +D + LA W + + LL + + R+YLD++GPAL RH L Sbjct: 875 KEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRD---LG 931 Query: 1026 KLAGADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEALRHGRR 1085 LAG P A + G + +++ +++ + +R EE+ LEA+R G Sbjct: 932 DLAGV--PAHADISGHPARFAVQMIHSYDLLDDDLE------ERMEEKSERLEAIRRGEP 983 Query: 1086 VPNGSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEESLHGDA 1145 VP GS A + + +L W YP+ + I K SV+E+K +++ S Sbjct: 984 VP-GSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYS------------ 1030 Query: 1146 GLSLTRGAAGTDSLHLQRPKFMEKRGLSPSERGTAYHTVMQHVPLEGVVDRSVLEATIAR 1205 G + + A G S+ +RP FM K+GL+ +E+GTA HTVMQH+PL V E T+ R Sbjct: 1031 GRAPVKPADG--SILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHR 1088 Query: 1206 LTRLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAYHGLEYX 1265 L +LT EQ +A++I +I F+ E+G +LIGA WK RE PFS +PA E Y Sbjct: 1089 LYEKELLTEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIY------ 1142 Query: 1266 XXXXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAV---LEH--QGGLET 1320 E +L+QG+IDCL+ E L LLDYK+D + +H +G Sbjct: 1143 ----------PDAHEADEPLLVQGIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPI 1192 Query: 1321 LKEKYRFQLELYSKALLDILGEPVSEIWLYFFDGGHAVKL 1360 LK++Y Q++LY+KA+ I V LYFFDGGH + L Sbjct: 1193 LKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDGGHILTL 1232 >ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] Length = 1243 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1347 (37%), Positives = 731/1347 (54%), Gaps = 129/1347 (9%) Query: 16 WSDDQWRAIAESGDDILVAAAAGSGKTAVLVERIIRKISNEENGFSVDRLLVATFTKAAA 75 W+ +Q AI SG DILVAAAAGSGKTAVLVERII+K+ E N ++D LLV TFT AAA Sbjct: 4 WTKEQEEAIYTSGSDILVAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTNAAA 63 Query: 76 AEMRQRIREAXXXXXXXXXXXXXXXXXXXXXXRRQLALLGRASITTLHSFCLEVIRRYYQ 135 EMR R+ A ++QL+LL RASI+TLHSFCL+++++ Sbjct: 64 QEMRNRVGAALEQALAANPSSIHL--------KKQLSLLQRASISTLHSFCLDIVKKNAY 115 Query: 136 LIPIDPGFRILNEHEAEMMRQXXXXXXXXXKYGEVAGDGEDTVFVRLADWFSGERSDDAV 195 ++ IDP FRI ++ E ++++Q YG+ + +D+ F + + F+ +RSD + Sbjct: 116 ILDIDPSFRIADDMEMDLLKQEVLDDLLEEWYGD-SNPNQDSFF-EVVNRFTSDRSDAEM 173 Query: 196 HSLVQRLHDFARSHPWPAQWLRDTAADFSLPDTEALSRTPWVQSILADAKLTLDGAASQL 255 L++ LH FA PWP QWL +++P+ PW+ + + LD + ++ Sbjct: 174 EELIRSLHTFAMQSPWPNQWLDKLVQTYNIPEEWTEEELPWMNVLRDEVSRQLDAVSQEI 233 Query: 256 RQGREIALQPGGPAPYADNLAADLEMVQALQEALEFRPWAELYDIFIEISFGKLKACKKD 315 I + GP YA + + ++Q + +E W L +++ FGKL K D Sbjct: 234 DIAYSITQEADGPYHYAKTIEEEKAIIQEALKNME--SWKYLQQSMLQVKFGKLSGKKVD 291 Query: 316 STDPGLQERVKELRDNVKKSLLELQKSLFGRPAEAFLGELHEAAPLMRELAETVIEFGER 375 D + +VK+LRD+ KK ++Q+ F R +A + ++ AP+++ L E V +F + Sbjct: 292 -CDEEKKTKVKKLRDSYKKRFQKMQEVWFARNLDAHVYDMRVLAPVIKHLVELVKQFQDS 350 Query: 376 YRIEKAGRGMVDFSDLEHYCLQILRHADSEPGHSLPSDAAMEYRDQFDEVLLDEYQDTNS 435 + K + +VDFSDLEHYCLQIL S +PS AM+ + QF EVL+DEYQDTN Sbjct: 351 FAKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVLVDEYQDTNM 410 Query: 436 VQEEIVRLIS-RESPGNRFMVGDMKQSIYRFRLAEPGLFLDKYKSFGSAAGGGSVIDLAR 494 VQE I++LIS R+ GN FMVGD+KQSIYRFR AEP LF+DKYK F ++ IDLAR Sbjct: 411 VQETILQLISDRQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFSNSDDPSIRIDLAR 470 Query: 495 NFRSRLEVVNAVNMIFRQIMDSTVAEISYDERAELVYGAHF----PGAAEKGPDTYFAPE 550 NFRSR V+ N IFRQ+ D + EISYD+ AEL+YG P A+ PE Sbjct: 471 NFRSRENVLLGANYIFRQLFDEDLGEISYDDAAELIYGNKMYDDHPLEAK--------PE 522 Query: 551 LLLIDXXXXXXXXXXXXAEDGELPPQENEAMESETAQLEARAIVRRISQMTGMSGGE-PL 609 LLLID +ED E E + E AQ+EARA ++I G E P+ Sbjct: 523 LLLID----------NNSEDVEQSDNEETVEDLEKAQIEARAYAKQIKNWIGTPEDEIPM 572 Query: 610 MIYDKALKIMRPVVYGDIVILLRSARIWTPLMVEELRLEGIPAYGDQNKGYFQATEVEIA 669 + DKA R + Y DIVIL+RS W + +EL+ +GIP Y D + GYF+A E+++ Sbjct: 573 QVVDKATGKQRDLQYKDIVILMRSM-TWASTIADELQQQGIPTYADLSTGYFEAIEIKVM 631 Query: 670 LSLLQIVDNPRQDIPLAGVLRSPVVNLREEELAAVRLCS-DGSFLDAVLAAAGEQTEIGD 728 LS L+++DNPRQDIPLA +LRSP++ L E++LA++RL SF +AV + + D Sbjct: 632 LSFLKVIDNPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSD 691 Query: 729 GSGGHHAFKXXXXXXXXXXXXXXXXXXGDVPSADHMAGKAAMPEISGKLRKKLQVFLRQL 788 K L F+ L Sbjct: 692 TV------------------------------------------------KSLIRFMEML 703 Query: 789 EGWRTAAHQGSLSTLIWRIYTESGYLEWVGGLPGGFQRQNNLTALYDRAVQFENDTNARG 848 +R +A QGSLS LIW IY E+GY ++VG +PGG QRQ NL ALYDRA +E+ T+ RG Sbjct: 704 NDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYDRARGYES-TSFRG 762 Query: 849 LFRFLVFINRLRXXXXXXXXXXXXXXXXXXVRIMTIHKSKGLEFPVVFLAGMAKPFNRQD 908 L+RFL FI R+ VRIMTIHKSKGLEFP+V L GM K FN++D Sbjct: 763 LYRFLRFIERMEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIVILGGMNKEFNQRD 822 Query: 909 LHSPFLMHKELGFGPRFVEPKTRVTYPTLPYLAISRRSRLELLAEEMRVLYVGLTRPRDK 968 L +L+HK+LGF ++++P R+ YPTL Y A+ + ++L+EE+RVLYV LTR ++K Sbjct: 823 LSEKYLLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEIRVLYVALTRAKEK 882 Query: 969 MILVGTVRDLPRTLAGWSSVQGREQMLLEDHMLARGRSYLDWVGPALIRHPRAAILRKLA 1028 +++VGTV + + L W + +L + ++YLDWVGPAL+RH + +R Sbjct: 883 LLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPALLRHVGSEKIRT-E 941 Query: 1029 GADGPVSAVLHGDASNWSISAVNAQEXXXXXXXXXXXTADRNEERQAVLEALRHGRRVPN 1088 V ++ D S+W I+ +A + + D ++ + E + + V Sbjct: 942 NIGNQVLESINQDPSDWQITMNHALD----YMDMKDSSMDNDDN---LKEKVFNWESVET 994 Query: 1089 GSAAREAEVTGRLKWVYPYAAASGIPAKTSVTELKSMLSMQEQPSYDLLEESLHGDAGLS 1148 + +V RL + Y Y A+ AK SVTELK +++ S + HG G Sbjct: 995 EQEGLKNDVDARLSYEYAYKQATVFRAKQSVTELKRQQEVKDDYSDQQILPPSHGPIG-- 1052 Query: 1149 LTRGAAGTDSLHLQRPKFMEKR-GLSPSERGTAYHTVMQHVPLEGVVDRSVLEATIARLT 1207 +RP F++K+ LSP+E+GTA HTVMQH+P+ V+ +E I ++ Sbjct: 1053 -------------KRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLSEPEIEENIEKMV 1099 Query: 1208 RLAILTGEQAEAVEISDIEAFYSGEMGRRLIGASWKRREQPFSYMVPAGEAYHGLEYXXX 1267 LT +A+++ I +E F+ E+ ++I + RE PFS M+PA E Y + Sbjct: 1100 LEEKLTRMEADSINIRAVERFFHTEIASKIISGNDMHREVPFSIMLPASEVYANWK---- 1155 Query: 1268 XXXXXXXXXXXXXFGESVLIQGVIDCLFREEGRLILLDYKTDAVLEHQGGL--ETLKEKY 1325 E VLIQGVIDCL + + I+LDYKTD + ++ + L +Y Sbjct: 1156 -----------DQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQELIHRY 1204 Query: 1326 RFQLELYSKALLDILGEPVSEIWLYFF 1352 + Q+ LY +A+ I +PV + +LYFF Sbjct: 1205 QTQMTLYRRAIEQIWKQPVEQTYLYFF 1231 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,803,866,908 Number of extensions: 69754570 Number of successful extensions: 171254 Number of sequences better than 1.0e-05: 388 Number of HSP's gapped: 171752 Number of HSP's successfully gapped: 454 Length of query: 1360 Length of database: 757,237,578 Length adjustment: 138 Effective length of query: 1222 Effective length of database: 382,553,916 Effective search space: 467480885352 Effective search space used: 467480885352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)