BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0020.p (76 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_797296.1| ATP-dependent Clp protease, proteolytic subunit... 110 1e-23 ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit ... 110 1e-23 ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit ... 109 2e-23 ref|NP_349247.1| Protease subunits of ATP-dependent protease, Cl... 109 2e-23 ref|NP_717403.1| ATP-dependent Clp protease, proteolytic subunit... 109 2e-23 >ref|NP_797296.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio parahaemolyticus RIMD 2210633] sp|Q87R80|CLPP_VIBPA ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio parahaemolyticus] Length = 200 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 51/71 (71%), Positives = 57/71 (80%) Query: 1 MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60 MIHQPLGG QGQASDI IH IL +QKLN + + TGQPLE IERDTDRDNFMSAE+A Sbjct: 126 MIHQPLGGFQGQASDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQA 185 Query: 61 KEYGLIDQVLS 71 EYG++D VLS Sbjct: 186 VEYGIVDAVLS 196 >ref|NP_244431.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans] sp|Q9K709|CLP1_BACHD ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp 1) pir||D84095 endopeptidase Clp (EC 3.4.21.92) chain P [similarity] - Bacillus halodurans (strain C-125) dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit [Bacillus halodurans] Length = 194 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/72 (68%), Positives = 62/72 (86%) Query: 1 MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60 MIHQPLGG +GQASDI IHT IL+ R+ LN+I +RTGQPLE+I +DTDRDNFM+AE+A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 61 KEYGLIDQVLSS 72 +EYGLID+V+ + Sbjct: 181 REYGLIDKVIET 192 >ref|NP_371292.1| ATP-dependent Clp protease proteolytic subunit homologue [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373978.1| clpP [Staphylococcus aureus subsp. aureus N315] ref|NP_645547.1| ATP-dependent Clp protease proteolyticsubunit homologue~ORFID:MW0730 [Staphylococcus aureus subsp. aureus MW2] sp|Q99VK9|CLPP_STAAM ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) pir||A89850 hypothetical protein clpP [imported] - Staphylococcus aureus (strain N315) dbj|BAB41956.1| clpP [Staphylococcus aureus subsp. aureus N315] dbj|BAB56930.1| ATP-dependent Clp protease proteolytic subunit homologue [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94595.1| clpP [Staphylococcus aureus subsp. aureus MW2] Length = 195 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 49/70 (70%), Positives = 62/70 (88%) Query: 1 MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60 MIHQPLGG QGQA++I I + ILKTR+KLN+I +RTGQ +EKI++DTDRDNF++AEEA Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180 Query: 61 KEYGLIDQVL 70 KEYGLID+V+ Sbjct: 181 KEYGLIDEVM 190 >ref|NP_349247.1| Protease subunits of ATP-dependent protease, ClpP [Clostridium acetobutylicum] sp|P58276|CLPP_CLOAB ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) pir||H97224 protease subunits of ATP-dependent protease, ClpP [imported] - Clostridium acetobutylicum gb|AAK80587.1| Protease subunits of ATP-dependent protease, ClpP [Clostridium acetobutylicum] Length = 193 Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 48/71 (67%), Positives = 62/71 (87%) Query: 1 MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60 MIHQPLGG +GQA+DI IH IL+ ++KLN IY +RTG+P+E IE+DTDRD+F+SAEEA Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180 Query: 61 KEYGLIDQVLS 71 KEYGLID+V++ Sbjct: 181 KEYGLIDEVIT 191 >ref|NP_717403.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella oneidensis MR-1] gb|AAN54847.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella oneidensis MR-1] Length = 202 Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/71 (70%), Positives = 56/71 (78%) Query: 1 MIHQPLGGVQGQASDIWIHTDWILKTRQKLNQIYVDRTGQPLEKIERDTDRDNFMSAEEA 60 MIHQPLGG QGQASDI IH IL + KLNQ+ D TGQPLE IERDTDRDNFMSA +A Sbjct: 129 MIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATQA 188 Query: 61 KEYGLIDQVLS 71 EYGL+D V++ Sbjct: 189 VEYGLVDAVMT 199 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 114,520,992 Number of extensions: 3727802 Number of successful extensions: 11112 Number of sequences better than 1.0e-05: 760 Number of HSP's gapped: 11085 Number of HSP's successfully gapped: 760 Length of query: 76 Length of database: 757,237,578 Length adjustment: 46 Effective length of query: 30 Effective length of database: 632,343,024 Effective search space: 18970290720 Effective search space used: 18970290720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)