BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0038.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_624096.1| Transcriptional regulator [Thermoanaerobacter t... 204 3e-51 ref|NP_243789.1| transcriptional regulator involved in carbon ca... 181 3e-44 gb|EAJ57249.1| unknown [environmental sequence] 181 3e-44 ref|NP_693478.1| transcriptional regulator [Oceanobacillus iheye... 177 2e-43 ref|NP_980355.1| maltose operon transcriptional repressor [Bacil... 169 7e-41 >ref|NP_624096.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM25700.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 341 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 187/316 (59%), Gaps = 3/316 (0%) Query: 1 MKVTITDIAIAAGVAKSTVSKVLNDSPKISQETKQKVREIMKQMNYTPSSIATGLARQSS 60 M VTI D+A A VA STVS+V+ DSP+IS+ETK++V + M+++ Y P++IA LA + + Sbjct: 5 MNVTIKDVAKRANVAPSTVSRVIADSPRISKETKERVWKAMEELGYYPNAIARSLASKVT 64 Query: 61 SNIGLLIDMSKSSEFLNQFFYNIIGGIESVIGSLKYELTIANVEHNHPDGHFLHRLVRSK 120 + +GL++ S F N FF ++ GI V KY+L ++ + + + R+V+ K Sbjct: 65 NTLGLIMPRSTEEAFSNPFFPEVMRGISVVAHREKYDLLLSTSGNKEEEKEAVIRMVKGK 124 Query: 121 RVDGLIANTSVLTEELCTRLNHLEFPYVSLGE-VAASGC-WVDFDNEAGGRMLTRHLLEE 178 RVDG+I +S T+EL L +FP+V +G+ + A G WVD DN ++ T +L++ Sbjct: 125 RVDGIILLSSRTTDELIPWLRDEKFPFVVIGKPLDARGVYWVDNDNIGASKLATNYLIKH 184 Query: 179 GYSAVAFIGGYEGDPLFIRRLEGCRQVLGQAGKPLRKEWIINGEAEEAFGYQAAKQLLLS 238 G+ +AFI G + + RL+G + L + G ++E + E E GY+A + +L Sbjct: 185 GHREIAFISGSLEYVVSLDRLDGYKLALEENGLTFKRELVEQEEFSEDGGYRAMMK-ILE 243 Query: 239 ETPPDSVICMSNFAAYGVLLAARELGVKVPTQLGIATFDDYPLSRYTSPPLTSLNLDTFH 298 P V+ + A+GV+ A + G +VP + I F++ PLS + +PPLT++++ TF Sbjct: 244 RAKPTGVVVTDDVMAFGVIRATIDKGFRVPEDISIVGFNNIPLSAFANPPLTTIDISTFE 303 Query: 299 LGVSAGKLLMERIGGK 314 LG+ + +LL+ R+ K Sbjct: 304 LGIKSAELLIARLKQK 319 >ref|NP_243789.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] pir||C84015 transcription regulator involved in carbon catabolite control BH2923 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06642.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] Length = 344 Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 177/316 (56%), Gaps = 5/316 (1%) Query: 1 MKVTITDIAIAAGVAKSTVSKVLNDSPKISQETKQKVREIMKQMNYTPSSIATGLARQSS 60 M VTI D+A A VA STVS+V+ ++P+ISQ TK++VRE M+Q+ Y P+ A L QS+ Sbjct: 1 MAVTIKDVAKLAKVAPSTVSRVIANNPRISQRTKERVREAMEQLGYYPNYNARSLVNQST 60 Query: 61 SNIGLLIDMSKSSEFLNQFFYNIIGGIESVIGSLKYELTIANVEHNHPDGHFLHRLVRSK 120 +G++I S F N FF +I GI + KY L ++ + + +V+S+ Sbjct: 61 KTLGIIIPSSARIAFQNPFFPEVIRGITTKAYVEKYGLYLSTGQTEEELLAEVKEMVQSR 120 Query: 121 RVDGLIANTSVLTEELCTRLNHLEFPYVSLG-----EVAASGCWVDFDNEAGGRMLTRHL 175 RVDG++ + +++ L FP+V +G ++ +V+ DN +M+T ++ Sbjct: 121 RVDGILLLYAKQDDKVMPYLIEENFPFVLVGRPYDDQLKELVSFVNNDNVKAAKMVTEYI 180 Query: 176 LEEGYSAVAFIGGYEGDPLFIRRLEGCRQVLGQAGKPLRKEWIINGEAEEAFGYQAAKQL 235 L G+ + FIGG + I EG R+ L AG P R+E+++ + E G +A +L Sbjct: 181 LLLGHRKIGFIGGNLEYTVTIDHKEGYRRALANAGIPFREEYVVYYDEVEEGGQEAVIEL 240 Query: 236 LLSETPPDSVICMSNFAAYGVLLAARELGVKVPTQLGIATFDDYPLSRYTSPPLTSLNLD 295 + E PP ++I + A GVL E+ V VP ++ I +F++ +S +SPPLT++++ Sbjct: 241 MSLEEPPTALIVADDLMALGVLRMLDEMDVSVPEEMSIISFNNAMISELSSPPLTTVDIH 300 Query: 296 TFHLGVSAGKLLMERI 311 F LG A + L+E++ Sbjct: 301 IFDLGFQATECLIEKM 316 >gb|EAJ57249.1| unknown [environmental sequence] Length = 334 Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/318 (34%), Positives = 166/318 (52%), Gaps = 16/318 (5%) Query: 4 TITDIAIAAGVAKSTVSKVLNDSPKISQETKQKVREIMKQMNYTPSSIATGLARQSSSNI 63 TI D+A AGV+ STVS VLN + ++S++ QKV E + ++NY P+S+A L S+ I Sbjct: 3 TIKDVASRAGVSISTVSHVLNHTRRVSEDATQKVLEAVAELNYAPNSVARSLKINSTKTI 62 Query: 64 GLLIDMSKSSEFLNQFFYNIIGGIESVIGSLKYELTIANVEHNHPDGHFLHRLVRSKRVD 123 G+L+ S N FF ++ G+E+ Y L + N E+ P + R++ KRVD Sbjct: 63 GMLVTTSA-----NPFFAEVVQGVEAYCFEQGYSLILCNTENQPPRQQYYLRMLMEKRVD 117 Query: 124 GLIANTSVLTEELCTRLN-HLEFPYVSLGEVAASGCWVDFDN------EAGGRMLTRHLL 176 GL+ + + L L H P V L G DF N G R+ RHLL Sbjct: 118 GLLVLGTDIDTPLRDMLRIHKNVPQVVLD----WGTECDFANVINDNARIGARLAVRHLL 173 Query: 177 EEGYSAVAFIGGYEGDPLFIRRLEGCRQVLGQAGKPLRKEWIINGEAEEAFGYQAAKQLL 236 E+G+ + I G P +RL+G R LG+ G L+ E I G+ E G+ A +++L Sbjct: 174 EQGHRDIVCITGQLAKPTTQQRLDGVRDALGEQGLTLKDEQIFEGDYESQSGFDAMQRIL 233 Query: 237 LSETPPDSVICMSNFAAYGVLLAARELGVKVPTQLGIATFDDYPLSRYTSPPLTSLNLDT 296 + P +V + A G + AA E GVKVP + + +DD ++R++SPPLT++ Sbjct: 234 ALKPRPTAVFAFDDPMAIGAICAAWEAGVKVPDDISMIGYDDVEMARFSSPPLTTIRHPK 293 Query: 297 FHLGVSAGKLLMERIGGK 314 LG+ A + L+ RI K Sbjct: 294 AELGLLAVQQLVSRIRNK 311 >ref|NP_693478.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC14513.1| transcriptional regulator involved in carbon catabolite control [Oceanobacillus iheyensis HTE831] Length = 338 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 3/311 (0%) Query: 3 VTITDIAIAAGVAKSTVSKVLNDSPKISQETKQKVREIMKQMNYTPSSIATGLARQSSSN 62 VTI DIA A GV+ STVS+V+ D+ +IS+ETK KVR+ M+ + Y P+ A LA +S+ Sbjct: 2 VTIKDIAKATGVSPSTVSRVIADNSRISEETKAKVRKAMEDLGYFPNMTARNLAVKSTKT 61 Query: 63 IGLLIDMSKSSEFLNQFFYNIIGGIESVIGSLKYELTIANVEHNHPDGHFLHRLVRSKRV 122 IG+++ S N FF I+ GI SV L+Y + +++ + + R+V V Sbjct: 62 IGVILPSSADKSLQNPFFSEILRGIGSVTHKLQYSMMLSSGQTEEEIYAEVQRIVLGSYV 121 Query: 123 DGLIANTSVLTEELCTRLNHLEFPYVSLG---EVAASGCWVDFDNEAGGRMLTRHLLEEG 179 DG+I S L + + L FP+V +G E+ +VD DN G +T HL+E G Sbjct: 122 DGIILLYSRLNDRVTQFLVEKGFPFVIVGKPQELNDRITYVDNDNIQAGEDITSHLIETG 181 Query: 180 YSAVAFIGGYEGDPLFIRRLEGCRQVLGQAGKPLRKEWIINGEAEEAFGYQAAKQLLLSE 239 ++ +AFIGG + + I R++G L +A P+ +E++I+ E ++ G +A +++L Sbjct: 182 HNRIAFIGGAKDLVVTIDRMQGYTNALKKADIPILEEYLIHTEFLKSGGKEAVEKILRLP 241 Query: 240 TPPDSVICMSNFAAYGVLLAARELGVKVPTQLGIATFDDYPLSRYTSPPLTSLNLDTFHL 299 PD+V+ + + GV+ E G+ VP + + +F++ LS P LT++++ + L Sbjct: 242 ERPDAVVVSDDLISIGVIGMLEESGLSVPEDISLVSFNNAYLSEIIHPALTTIDIQIYKL 301 Query: 300 GVSAGKLLMER 310 GV + K ++E+ Sbjct: 302 GVESAKAIIEK 312 >ref|NP_980355.1| maltose operon transcriptional repressor [Bacillus cereus ATCC 10987] gb|AAS42963.1| maltose operon transcriptional repressor [Bacillus cereus ATCC 10987] Length = 343 Score = 169 bits (429), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 5/315 (1%) Query: 1 MKVTITDIAIAAGVAKSTVSKVLNDSPKISQETKQKVREIMKQMNYTPSSIATGLARQSS 60 M VTI D+A A VA STVS+V+ D+P IS++TK++VR++M ++ Y P+ A LA Q++ Sbjct: 1 MTVTIKDVAKKANVAPSTVSRVIADNPSISEKTKRRVRKVMSELGYHPNLNARNLANQTT 60 Query: 61 SNIGLLIDMSKSSEFLNQFFYNIIGGIESVIGSLKYELTIANVEHNHPDGHFLHRLVRSK 120 +GL++ S S F N FF +I GI S Y L ++ E + + ++V+ + Sbjct: 61 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEDEIFNGVVKMVQGR 120 Query: 121 RVDGLIANTSVLTEELCTRLNHLEFPYVSLG---EVAASGCWVDFDNEAGGRMLTRHLLE 177 ++ G+I S + + L+ FP+V +G + +VD DN R + +L+ Sbjct: 121 QIGGIILLYSRENDRIIQYLHKQNFPFVLIGKPYDRKEEITYVDNDNYTAAREVAEYLIS 180 Query: 178 EGYSAVAFIGGYEGDPLFIR-RLEGCRQVLGQAGKPLRKEWIINGEAEEAFGYQAAKQLL 236 G+ +AFIGG D L R RL G L A L KE+I++ + G QA ++L+ Sbjct: 181 LGHKQIAFIGG-GSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELM 239 Query: 237 LSETPPDSVICMSNFAAYGVLLAARELGVKVPTQLGIATFDDYPLSRYTSPPLTSLNLDT 296 + PP +++ + GVL A + G VP + I +F++ LS SPPL++++++ Sbjct: 240 ALKQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNI 299 Query: 297 FHLGVSAGKLLMERI 311 + LG A K L++++ Sbjct: 300 YQLGYEAAKALVDKV 314 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 463,309,849 Number of extensions: 18609099 Number of successful extensions: 54020 Number of sequences better than 1.0e-05: 1091 Number of HSP's gapped: 52453 Number of HSP's successfully gapped: 1095 Length of query: 339 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 213 Effective length of database: 415,135,104 Effective search space: 88423777152 Effective search space used: 88423777152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)