BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0029.p
         (186 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00182193.1| hypothetical protein Exigu252001 [Exiguobacte...   112   5e-24
ref|NP_391111.1| yutD [Bacillus subtilis] >gi|7475461|pir||F7002...   110   2e-23
ref|NP_244300.1| BH3433~unknown conserved protein in B. subtilis...   110   2e-23
ref|NP_834637.1| hypothetical Cytosolic Protein [Bacillus cereus...   108   9e-23
ref|NP_981395.1| conserved hypothetical protein [Bacillus cereus...   107   2e-22

>ref|ZP_00182193.1| hypothetical protein Exigu252001 [Exiguobacterium sp. 255-15]
          Length = 115

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 62/75 (82%)

Query: 4  KDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYINE 63
          ++G+N EAF GR+S+VL++YDYI+GDWG+ QLRL+GFY DNH K   DT IS + DY+ E
Sbjct: 5  REGFNEEAFIGRFSDVLEKYDYIVGDWGHGQLRLRGFYDDNHEKATFDTKISHVADYLYE 64

Query: 64 YCNFGCAYFVLHKLK 78
          YCNFGCAYF++ +++
Sbjct: 65 YCNFGCAYFIVKRME 79


>ref|NP_391111.1| yutD [Bacillus subtilis]
 pir||F70023 hypothetical protein yutD - Bacillus subtilis
 emb|CAB15221.1| yutD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 102

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 63/78 (80%)

Query: 2   DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
           + KDG+N EAF+ RYS++L++YDYI+GDWGY QLRLKGF+ D + K   +T IS + +YI
Sbjct: 25  NFKDGFNEEAFKARYSDILNKYDYIVGDWGYGQLRLKGFFDDQNQKATFETKISTLDEYI 84

Query: 62  NEYCNFGCAYFVLHKLKE 79
            EYCNFGCAYFVL ++++
Sbjct: 85  YEYCNFGCAYFVLKRIRK 102


>ref|NP_244300.1| BH3433~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||A84079 hypothetical protein BH3433 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB07152.1| BH3433~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 93

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 60/75 (80%)

Query: 4  KDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYINE 63
          KDGWN EAF  RYS+VL++YDYI+GDWGY+QLRL+GF+ D + K   D  IS + DY+ E
Sbjct: 16 KDGWNEEAFVERYSDVLNKYDYIVGDWGYNQLRLRGFFDDQNKKSTYDKKISTLQDYLYE 75

Query: 64 YCNFGCAYFVLHKLK 78
          YCNFGCAYFV+ ++K
Sbjct: 76 YCNFGCAYFVVKRVK 90


>ref|NP_834637.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gb|AAP11838.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
          Length = 101

 Score =  108 bits (269), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 63/77 (81%)

Query: 2   DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
           + +DG++ EAF+ RY+E+L++YDYI+GDWGY QLRL+GF+ D++ +   DT IS + +Y+
Sbjct: 24  NFRDGFSEEAFKERYAEILNKYDYIVGDWGYEQLRLRGFFDDSNQRATYDTKISTLTEYL 83

Query: 62  NEYCNFGCAYFVLHKLK 78
            EYCNFGCA+FVL K+K
Sbjct: 84  YEYCNFGCAHFVLRKVK 100


>ref|NP_981395.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS44003.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 101

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 63/77 (81%)

Query: 2   DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
           + +DG++ EAF+ RY+E+L++YDYI+GDWGY QLRL+GF+ D++ +   DT IS + +Y+
Sbjct: 24  NFRDGFSEEAFKERYAEILNKYDYIVGDWGYEQLRLRGFFDDSNQRATYDTKISTLSEYL 83

Query: 62  NEYCNFGCAYFVLHKLK 78
            EYCNFGCA+FVL K+K
Sbjct: 84  YEYCNFGCAHFVLRKVK 100


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 274,920,325
Number of extensions: 10531258
Number of successful extensions: 20740
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 20731
Number of HSP's successfully gapped: 25
Length of query: 186
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 68
Effective length of database: 436,855,896
Effective search space: 29706200928
Effective search space used: 29706200928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 122 (51.6 bits)