BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0026.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00103861.1| COG0745: Response regulators consisting of a ... 228 2e-58 ref|ZP_00180362.1| hypothetical protein Mther170201 [Moorella th... 216 5e-55 ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus... 214 2e-54 ref|NP_842823.1| DNA-binding response regulator [Bacillus anthra... 214 2e-54 ref|NP_830149.1| Two-component response regulator [Bacillus cere... 211 2e-53 >ref|ZP_00103861.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Desulfitobacterium hafniense] Length = 233 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/226 (48%), Positives = 153/226 (67%), Gaps = 4/226 (1%) Query: 106 ILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNGFEL 165 IL+ DD+ + EL++DFL +E + + A D EAL LF+ + ++LDIMMPG +G E+ Sbjct: 6 ILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGMEV 65 Query: 166 CRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRRF--AS 223 CR+IRAESN+PI+ LSA+ +VDKI GL LG DDYIVK SPGE+VARVKA LRRF ++ Sbjct: 66 CRRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKMSA 125 Query: 224 QKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYEQLIVKF 283 + R+L Y +++++ E + G+ ++LT +E+ELLR HP V + EQ+ Sbjct: 126 VPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFANV 185 Query: 284 W--NGVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFEGG 327 W N GD +T+ VH+ +LREKIESD P ++ VWGVGY+F GG Sbjct: 186 WGFNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFSGG 231 >ref|ZP_00180362.1| hypothetical protein Mther170201 [Moorella thermoacetica ATCC 39073] Length = 229 Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 108/227 (47%), Positives = 154/227 (67%), Gaps = 2/227 (0%) Query: 100 MSEISTILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPG 159 M ++ ILVVDD+ +IVEL++ LE F ITA D AEAL + I+LD+M+P Sbjct: 1 MIKLPKILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPK 60 Query: 160 QNGFELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLR 219 +GFE+CR +RA ++PIL L+AR ++VD++ GL LG DDY+ K SP E+VARV+A+LR Sbjct: 61 VDGFEVCRSLRARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILR 120 Query: 220 RFASQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYEQL 279 R A ++Q + I+ G + +N ++ V V GK VDLT +EY+LL+L E+ VFS E L Sbjct: 121 RVAEKQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREAL 180 Query: 280 IVKFWNG--VGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRF 324 + + W G GD TI VH+ LREKIE++P+ P+Y++ V GVGY+F Sbjct: 181 LERLWEGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKF 227 >ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 154/230 (66%), Gaps = 11/230 (4%) Query: 104 STILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNGF 163 TILVVDD++ I L++ +L+NE + V+ A D E L L +++ +H +VLDIMMP +G Sbjct: 4 ETILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63 Query: 164 ELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRRFAS 223 +C ++R E +PI+ LSA++ D+DKI GLT G DDY+ K +P E++AR+K+ LRR+ Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYM- 122 Query: 224 QKQMDG------RILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYE 277 +M+G L+ G +K+N+ST +VIVEG+ V LTPRE+ +L L +P VFS E Sbjct: 123 --KMNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAE 180 Query: 278 QLIVKFWN--GVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFE 325 Q+ K WN +T+ VH+ ++REKIE +P +P+Y+ VWGVGY+ E Sbjct: 181 QIYEKVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIE 230 >ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 233 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/230 (45%), Positives = 153/230 (66%), Gaps = 11/230 (4%) Query: 104 STILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNGF 163 TILVVDD++ I L+ +L+NE + V+ A D E L L +++ +H +VLDIMMP +G Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63 Query: 164 ELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRR--- 220 +C +IR E +PI+ LSA++ D+DKI GLT G DDY+ K +P E++AR+K+ LRR Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 221 ---FASQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYE 277 FA Q + + L+ G +K+N+ST +VIVEG+ V LTPRE+ +L L +P VFS E Sbjct: 124 MNGFAIQNEDE---LEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAE 180 Query: 278 QLIVKFWN--GVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFE 325 Q+ K WN +T+ VH+ ++REKIE +P +P+Y+ VWGVGY+ E Sbjct: 181 QIYEKVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIE 230 >ref|NP_830149.1| Two-component response regulator [Bacillus cereus ATCC 14579] gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 233 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 152/230 (66%), Gaps = 11/230 (4%) Query: 104 STILVVDDDQSIVELLRDFLENENFHVITACDSAEALALFQQSSIHCIVLDIMMPGQNGF 163 TILVVDD++ I L+ +L+NE + V+ A D E L L +++ +H +VLDIMMP +G Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63 Query: 164 ELCRQIRAESNIPILFLSARSDDVDKIRGLTLGGDDYIVKSASPGEIVARVKAVLRR--- 220 +C ++R +PI+ LSA++ D+DKI GLT G DDY+ K +P E++AR+K+ LRR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 221 ---FASQKQMDGRILDYGRIKLNLSTREVIVEGKNVDLTPREYELLRLFVEHPRHVFSYE 277 FA Q + + L+ G +K+N+ST +VIVEG+ V LTPRE+ +L L +P VFS E Sbjct: 124 MNGFAIQNEDE---LEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAE 180 Query: 278 QLIVKFWN--GVGDKHTIRVHLSRLREKIESDPNQPKYLVNVWGVGYRFE 325 Q+ K WN +T+ VH+ ++REKIE +P +P+Y+ VWGVGY+ E Sbjct: 181 QIYEKVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIE 230 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 475,989,360 Number of extensions: 18768517 Number of successful extensions: 64506 Number of sequences better than 1.0e-05: 4486 Number of HSP's gapped: 60449 Number of HSP's successfully gapped: 4525 Length of query: 327 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 201 Effective length of database: 415,135,104 Effective search space: 83442155904 Effective search space used: 83442155904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)