BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0013.p
         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244280.1| BH3413~unknown [Bacillus halodurans] >gi|254908...    77   1e-13

>ref|NP_244280.1| BH3413~unknown [Bacillus halodurans]
 pir||E84076 hypothetical protein BH3413 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB07132.1| BH3413~unknown [Bacillus halodurans]
          Length = 79

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query: 1  MIPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLT 60
          +IPF +TWPY+ +  D+Y   CPFC + +V+  M P+ L+  +EG K  +  PCC+  LT
Sbjct: 3  VIPFENTWPYERMSGDIYFDECPFCGERHVLTSMSPEALELAKEGVKVSINLPCCRGRLT 62

Query: 61 VIDTDADYLLFDRAVR 76
          V++ D DYL  ++A+R
Sbjct: 63 VLEADDDYLWTNQALR 78


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.327    0.144    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 116,164,240
Number of extensions: 4052637
Number of successful extensions: 12143
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12143
Number of HSP's successfully gapped: 1
Length of query: 76
Length of database: 757,237,578
Length adjustment: 46
Effective length of query: 30
Effective length of database: 632,343,024
Effective search space: 18970290720
Effective search space used: 18970290720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)